KEGG   Xiphophorus maculatus (southern platyfish): 102233038
Entry
102233038         CDS       T02923                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102233038 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:xma03041]
    102233038 (prpf4)
Spliceosome [BR:xma03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    102233038 (prpf4)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_Gbeta Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_EML PRP4 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st eIF2A WD40_like Beta-prop_WDR11_1st Beta-prop_Nup120_160 WD40_RFWD3 DUF7239
Other DBs
NCBI-GeneID: 102233038
NCBI-ProteinID: XP_023194070
Ensembl: ENSXMAG00000002750
LinkDB
Position
8:588972..604223
AA seq 510 aa
MLDEEDSAPAVKKSRVFYGSLEEKERQRITMETASGAAAGSDALKAGIRAGNINISSGET
MEMEERVSERQLEALAEFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRER
LRSVLSVVGPDALKRSRKDEERAKRSRDECLQTWYHEGPASLKEARLWLARYSLPRAMRR
LEAARALKEVAEATKTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCALIRTLRGHNTNVGAVVFRPQAGVSLDRSDVSLASCAADGTVKLWNLES
DEPVADIEGHGDRVSRVSWHPSGRFLGTTCYDHSWRLWDLQLQEEILHQEGHSKGVHDIS
FHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGHHLATGSGDNTCK
VWELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKIWSHPGWMPLKTLAGHE
GKVMGVDVSPDGKLIATCSYDRTFKLWLSE
NT seq 1533 nt   +upstreamnt  +downstreamnt
atgttggacgaggaagactcggctccggccgtgaagaagagccgcgtgttctatggcagc
ctggaggagaaggagcggcagcgcatcaccatggagacggccagcggcgctgccgcagga
agtgatgcgctgaaggcgggcatcagagcaggaaatatcaacatctcatcaggagagacc
atggagatggaggagcgggtcagcgagcgccagctggaggcgctggccgagttcgagcgg
cgccgccgagcgcgacagatcaccgtctccaccgacgacgccgaggtgaaggccggcctt
cgagcgctgggagagccaatcacgctgttcggagaggggccggccgaccgccgagagagg
ctgcgcagcgttctgtctgtcgtcggtccggacgccctgaagagatccaggaaggacgaa
gagagagccaagaggtcacgggacgagtgtctgcagacttggtaccatgaaggccccgcc
tccctaaaggaagctcgcctctggttggctagatattctctaccacgggcgatgaggcgt
ctggaagccgcacgcgctttgaaggaggttgccgaggcgacgaagacgatccgccagcag
gagttgcacaagtcgctgaggaatctgaacaacttctgcagtcagattggagacgatcgg
ccaatcagcttctgccacttcagtccggactccaagatgctcgccacggcgtcctggagc
ggcctgtgcaagctgtggtcggtcccggactgcgccctgatccggaccctgagaggacac
aacaccaacgtgggtgccgtggtgttccgcccgcaggccggcgtctctctggaccggtcc
gacgtcagcctggcgtcctgcgccgccgacgggacggtgaagctgtggaacctggagagt
gacgagccagtggcggacatcgagggtcacggtgatcgggtttccagagtttcctggcat
ccgtccggaagattcctgggaaccacctgctatgaccactcctggcgtctctgggatctg
cagctgcaggaggaaatactccaccaggaaggtcacagcaaaggagttcatgacatcagc
ttccatcctgacggctccttggctgctacaggagggctcgatgccttcggcagggtgtgg
gacctgaggacggggcgctgcgtggttttcctggagggacacctgaaggagatctacagc
gttcacttcagtcctaacggccatcacctggccacaggaagtggagacaacacctgtaag
gtgtgggagctgcgcaacaggaagtgcctgtacacagtccccgcccaccagaacctgctg
tctgccgtccgattccaacccactgacggtcacttcctgttgaccggagcttacgacaac
acggcgaagatttggagccacccgggctggatgccgctgaagacgctagcaggacatgag
gggaaggtgatgggcgtggacgtgtcacctgatggcaagctgatcgccacctgctcctac
gaccgaaccttcaaactctggctgtcagagtga

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