Xiphophorus maculatus (southern platyfish): 102233216
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Entry
102233216 CDS
T02923
Name
(RefSeq) neurobeachin-like isoform X1
KO
K24183
neurobeachin
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102233216
Membrane trafficking [BR:
xma04131
]
Protein recycling
Rab GTPases and associated proteins
Rab4 associated proteins
102233216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Laminin_G_3
WD40
Neurobeachin
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
102233216
NCBI-ProteinID:
XP_023207503
Ensembl:
ENSXMAG00000007037
LinkDB
All DBs
Position
18:complement(8473291..8698789)
Genome browser
AA seq
2882 aa
AA seq
DB search
MTSEKPVAMPGSLSLSDRQPAPGHGHRGAAVPAVATGKPMMMSGSGSVVLPAGMINPAVP
IRNIKMKFAVLIGLIQVGEVSNRDIVETVLNLLVGGEFDLETNFIIQDAESIGCMVELLE
HCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIQQVLLKMSSVDDMIADLLVDMLGVLA
SYSITVKELKLLFSMLRGEGGLWPKHAIKMLSVLNQMPQRHGPDIFFNFPGRSAAAIALP
PIAKWPYQSGFTFNTWFRMDPLNNINVDKDKPYLYCFRTSKGIGYSAHFVGNCLIVTSLK
SKGKGFQHCVKYDFQPRTWYMISIVHIYSRWRNSEIRCYVNGQLVSYGDMAWHVNTNDSY
DKCFLGSSETADANRVFCGQLGAVYVFSEALNPAQIFAIHQLGPGYKSTFKFKSESDIHL
AEHHKQVLYDGKLAGSIAFTYNAKATDAQLCLESSPRENASIFVHSPHALMLQDVKATVT
HSIHSAIHSVGGIQVLFPLFAQLDFHQSKDSQVETTVCATLLAFLVELLKSSVAMQEQML
GGKGFLVIGYLLEKSSRAHISRAVLEQFLSFAKYLDGLPHGAPLLKQLCDHILFNAAIWI
YTPAKVQLSLYTYLSAEFIGTATIYNTIRRVGTVLQLMHMLKYYYWASNPADSSGITPKG
LDGPRPNQKEVISLRAFMLLFLKQLILKDRGVKEDELQSILNYLLTMQEDENLHDVLQLV
VALMSEHPASMIPAFDQRNGIRVVYKLLASKSENIRVQSLKVLGYFLKHLGHKRKVEIMH
THSLFTLLHERLMLHTNTVSVTTYNTLYEILTEQVCTQVVHKPHPEPDSTVKIQNPMILK
VVANLLKSSAPGTELMEVRRLFLSDMIKLFSSSRDNRRCLLQCSVWQDWMFSLGYINPKN
SEEQKMTEMMYNIFRILLYHAIKYEWGGWRVWVDTLSIAHSKVTYEAHKEYLAKMYEEYQ
RQEEENIKKGKKGLVSTICGLSAQTSNIKGVIEIGEIDDHSQTPDSEADYESADSRNLLT
EGKGSEGDFGGSENTLDGVRVAVHDLLVDIKAEKVEATEVKMDDTELSSETVGVSENRPL
VEVDSLLDNVYCAVVRKLDNNVSSMLMPKGSMNDQNAAPLITLDDEKDDIPHSNNFLFGK
VTGSIEDNLLPDLSLAEPLVLPRSELSDHTGSRDEIGLLAHMTGSLPSILAKEEFELKKV
LENMNSETEGFSKIPQTSDDTTEFEGELLVDKTNGAVEMRSNASETARSDDGKEKEMKKI
QTTATTQSLHGRPVSQLEKDIRADLGFRAVPITEEQRHQFSPGPRTTMFRIPEFKWSPMH
QRLLTDLLFALESDVHAWRSHCTKSVMDFVNSNENIIFVHNTIHLISQMVDNIIIACGGI
LPLLSAATSPSTVKTELENIEATQGMSSETAITFLSRLMVMVDVLVFSSSLNFSEIEAEK
NMSSGGLMRQCLRLVCCVAVRNCLEFRQRHNNRTQEILQNAVTCKTSGETGPTNLSPIKD
PDRLLQDVDINRLRAVVFRDVDDSKQAQFLALAVVYFISVLMVSKYRDILEPQCESGKMS
CQLGRSVRQEINSPTSKETPLSFTSSKEIFLPSEDLHIETSLPHTDSGIGDEQVASILNG
SGLDHKVGGVSAVNALISTLSSEVKKSQEILSEPSNVEVLKSSSSVISISQSKKGINVKE
ILKSLVAAPMEGVEAGLEPVSFPDCAAKAQAVLPVQFQSFDRSVVVPVKKTSPGSFAINT
LGSSSTSTSPGLSSCSTPNIFAAASATPKSMINTTGGAEAASASASSSTSLVNGATSKNL
PAVQTVAPMPEDTVENMSITTKLERALEKVAPLLREIFVDFAPFLSRTLLGSHGQELLIE
GLVCMKSSTSVVELVMLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEA
EFILNRQRAEDVHKHAEFESSCAQYAADRKEEEKMCDHLISAAKHRDHVTANQLKQKIVN
ILTNKHGAWGIPCQSQLHDFWRLDYWEDDLRRRRRFVRNPFGSTHLDIACKSSQEYALKE
EKVVKSKLVFRSPTLASQNPETELVLDGEDDNVSLLHEKEMDNVGGPVVLSSSAQLVAPV
LVARGTLSITTSEIYFEVDEDDPAFKRVDPKVLVYTDGLHGKWMFSEIRAVFSRHYLLQN
TAMEVFMANRTSVMFNFPDQATVKKIVYCLPRVGVGTSYGLPQARRISLATPRQLFKSSN
MTQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYDSEELDLTLPGNFRDLS
KPVGALNPKRAAFYSERYESGEEDQTPPYHYDSHYSTAATTLHWLVRIEPFTTFFLGAND
NKFDHPDRTFSAITRSWRNCQRDTSDVKELIPEFYYLPEMFVNSNGYHLGMREDGTMICD
VDLPAWAKKPEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHHLTYE
GSVSLESIADPLLREATEAQIQSFGQTPSQLLIEPHPPRSSAMHLCFLPQSPLMFKDQMQ
QDVIMVLKFPSNSPVTHVAANTLPHLTIPAVVTVTCSRLFAVNRWHNTVGLRGAPGYSLE
QAHHLPIEMDSLVANSTGSNKRQITDLVDQSIQITTHCFVVTADNRYILVCGFWDKSFRV
YSSETGKLTQIIFGHWDVVTCLARSESYIGGDCYIVSGSRDATLLLWYWSGRHHIIGDNP
NHGDYPAPRAVLTGHDQEVVCVSVCAELGLVISGAKEGPCLVHTITGDLLRELEGPDNYQ
CPRLISVSSEGHCIIYYERGRFCNFSINGKLLAQMEVNDSTRAILLSSDGHNLVTGGDNG
VVEVWQACDFRQLYIYPGCDAGIRAMDLSHDQRTLITGMASGSIVAFNIDFNRWHYEHQN
RY
NT seq
8649 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgagaaaccggtggcaatgccgggctcgctgtcgctctcggaccgtcagcct
gctccaggtcacgggcatcgcggagctgcggtccccgctgttgccaccgggaagccaatg
atgatgtccggctcaggttcagtggtcctcccggcaggcatgatcaaccctgcggttccc
atccggaatatcaagatgaaatttgctgttctgattggactcatccaggtcggcgaggtt
tctaaccgggatattgtggagacggtgctcaatctgttggtggggggagagtttgacctg
gagacaaacttcattattcaggatgctgagagcattggctgcatggtggagctgctggaa
cactgtgatgtcacctgccaggctgagatctggagcatgttcactgccattcttcgaaaa
agtgttcgaaatctgcagacgagcactgaagtggggctcatccaacaggtgctgctcaaa
atgagctcagtggatgacatgattgcagacttactggtggatatgttgggtgtattggcc
agctacagcatcacagtgaaggaactgaagttgctcttcagcatgctccgaggagaaggt
ggcctttggccaaagcatgcaatcaaaatgctgtcggtgttaaatcagatgccgcagaga
catggtccggacatcttcttcaactttcctggtcgcagcgcagcagcaattgctttgcct
cccattgctaagtggccttatcagagcgggtttacattcaacacttggttcagaatggat
cctctgaataatatcaatgtagacaaggacaaaccatatctctactgctttcgcaccagc
aaaggcattggctattctgcgcattttgtcgggaattgtttgattgtcacatcgctgaag
tccaaaggcaaaggcttccaacactgtgtgaagtatgactttcagcccaggacgtggtat
atgatcagcatagttcacatctacagccgctggaggaacagtgaaatcagatgctacgta
aacggacagctcgtttcttatggggacatggcatggcacgtcaacacaaatgatagctat
gataagtgcttcctcgggtcttcagaaacagccgatgcaaacagagtgttctgtgggcag
ctaggagctgtctacgtattcagtgaagctctcaatccggcacagatttttgcaattcat
cagctaggaccaggctataagagtacgtttaagttcaagtcggagagtgatatccactta
gcagagcatcacaagcaggtgttgtacgacggtaaattggcaggctccatcgccttcacc
tataacgccaaggccaccgacgcacagctttgcctggagtcctcgcctcgtgaaaacgcc
tctatctttgtgcactcaccgcacgcccttatgcttcaggatgtgaaagccacagttaca
cactccatccacagtgccatccactctgttggtggtatccaggtactctttccacttttt
gctcagctggactttcatcagtcaaaggacagccaggtggaaactacagtctgtgccact
ctcctagcctttttggttgagctgctgaagagttctgtggccatgcaggagcagatgctg
ggaggaaagggctttttagtgattgggtacctgctagagaagtcttctcgtgcacacatc
agcagggctgttttagagcagttcctctcctttgcaaagtatcttgatggcctgccacat
ggagcgccactgctgaaacagctgtgtgatcacatcctgtttaatgcagcaatttggatc
tataccccagccaaggttcagctttcattatatacatacctttctgctgagttcattggc
acagctaccatttacaacacaatccgtcgggttggtacggtccttcagctcatgcatatg
ctgaaatactactactgggcctccaatcccgcagacagtagtggcatcacaccaaaggga
ttagatgggccgaggccaaaccagaaagaggtaatctctctgcgggcgttcatgcttctc
ttcctcaaacaactcattctgaaggatcggggtgtgaaggaggatgaattgcagagcatc
ctcaactatttgctaacaatgcaggaggatgaaaacctgcatgatgtgttgcagttggtg
gtagctctcatgtctgagcatccagcttccatgatccctgcttttgaccagagaaatgga
atacgggtagtctacaagctcttggcctctaagagtgaaaatattcgtgtacaatccctc
aaagtacttggatattttctgaagcacttgggacacaaaaggaaggtggaaatcatgcac
acacacagcctttttactcttctgcacgagaggcttatgctgcacaccaacactgtgtct
gttacaacttacaacaccctttatgagattttgacagagcaggtgtgcacacaggtagtt
cacaaacctcatcctgagcctgactccactgtcaagattcagaatccaatgattctcaag
gttgtagcaaatttactgaagagctccgcccccggcacagaactgatggaggttcggcgg
ctcttcctttcggatatgatcaaactcttcagcagcagtcgagacaacagacggtgtctg
ttgcagtgctctgtatggcaagactggatgttttctctcggctacattaaccccaaaaac
tcagaagaacagaaaatgactgagatgatgtacaacatattccgtattctgctttatcat
gccatcaagtatgaatggggaggatggcgtgtgtgggtggacactctctctatagcccac
tctaaggtgacgtatgaggcgcacaaagaatatttagcaaagatgtatgaagagtaccaa
cgtcaggaggaggagaacataaagaaagggaagaagggtttggtcagcaccatctgtggt
ctctctgctcagacctcaaacatcaaaggtgtgattgagatcggagaaattgatgatcat
tcccagacccccgacagcgaggcagactatgagagtgccgattcgcgcaacctgctgact
gaagggaaggggtctgagggagacttcgggggatctgagaatacattagatggagtcaga
gttgcagttcatgaccttcttgtggacatcaaagctgaaaaggtggaagctacagaggtg
aagatggatgatacagagctgtcttcagagacagtgggagtatctgagaaccggcctctg
gttgaggtggattctctgttggataatgtttactgtgccgttgtgaggaagctcgacaat
aatgtcagcagtatgttgatgccaaagggcagcatgaatgaccagaatgctgcccctctc
attacactggatgatgagaaggacgacatccctcacagtaacaatttcctgtttggcaag
gtgacgggcagcattgaggacaatctcctaccggatctgagcctagctgagcctctggtc
ctgccgaggtcagagctttccgatcacactggatccagggatgaaattggccttctggct
cacatgactggctccttacccagcatcttggcaaaggaggagtttgaactcaaaaaagtg
cttgaaaacatgaactcagaaactgaaggcttttccaaaatcccacagacctctgatgat
acaacagaatttgaaggggaattgctggttgataagacgaatggtgcagtagagatgagg
agcaacgcctctgaaaccgcaaggtcagatgatggcaaagagaaggagatgaaaaagatt
cagacaacagccacaacacagagtttgcatggacgcccagtctctcagctggaaaaggac
atacgagcggaccttggctttagggccgtccccataacagaggaacagcgacatcagttc
agccctggtccccgcactacaatgttccgtattccagagttcaaatggtcacccatgcac
cagagactgctcactgacctgctatttgctctggagagtgatgtccatgcctggagaagc
cactgcaccaaatctgtcatggactttgttaatagcaatgaaaacatcatttttgtccac
aatactatccatctcatctcccaaatggtagacaacataatcatcgcctgtggagggatt
ttgccccttctttctgcagccacctctccctctactgtcaagactgagttggagaacatt
gaggcgacgcagggcatgtcctcagaaaccgccatcactttcttgtctcgtctcatggtt
atggtggacgttttggtgttttcgagctccttgaacttcagcgagatcgaggctgagaag
aacatgtcctctggtggtttgatgcgccagtgcctccgactggtctgctgtgtggctgtt
aggaactgtctggagtttagacagaggcacaacaacaggactcaggaaatcttgcagaat
gctgtgacctgcaagacatctggggaaactggccctactaacctgtctccaatcaaagat
cctgatcggctgctgcaggatgtggacatcaacagactgcgagctgttgtgtttcgtgat
gtggatgacagtaaacaagcccagttcttggctttggctgttgtgtacttcatctctgtc
ctcatggtttccaaataccgcgacatccttgagcctcagtgtgagtctgggaagatgagc
tgtcagttaggccgcagcgtacgccaggagatcaactcaccgaccagcaaagaaacacca
ctttcattcacaagcagtaaggagatttttttgccatctgaagaccttcacatagaaaca
tccttaccccacacagactctgggattggggatgagcaggtagccagcatccttaatggg
tctggcctggatcataaagtgggaggagttagtgctgtgaatgcgctcatttccacactt
tcctctgaggtgaagaagtcccaggagattctgtctgaaccctctaatgtcgaagtgctc
aaatcgtcctcctccgtcatcagcattagtcagtccaagaagggcattaatgtcaaggag
attttgaagagcttggttgccgccccgatggagggtgtggaggctggacttgagccagtg
tccttcccagactgtgctgcaaaggcccaggctgtgctgccagtgcagtttcagtccttt
gacaggagtgtggtggttcctgtgaagaaaacctcccctggcagctttgcgatcaacaca
ctgggatccagcagcaccagcacctcccctgggctttcaagctgcagcacccccaacatc
tttgccgctgcctctgcaacccctaaaagcatgatcaacaccaccggcggcgctgaggcg
gcctccgcctctgcatcgtcttccaccagtttagtcaacggcgcgacgagtaaaaatctt
cctgccgtgcaaaccgtggcccccatgcctgaagacacagtcgaaaatatgagcattact
acaaaattagagagagcattggagaaggtggctcccttgttgagagagatctttgtggac
tttgcaccctttctgtcacggactctgctgggcagccatggacaagagttactaattgaa
ggtctcgtatgtatgaagtcaagcacctcagtggtggagctcgtcatgcttctttgttct
caggagtggcagaactccattcagaagaatgctggcctcgctttcattgagctaataaat
gaaggaaggttgctgtgccatgccatgaaggaccacattgttcgcgttgccaacgaggct
gaattcatcctgaacagacagcgagctgaggacgtccacaaacatgcagagtttgagtcc
agctgtgcacagtatgctgcagacaggaaagaagaagagaagatgtgtgaccacctgata
agtgctgctaagcatagagatcatgtcacagccaatcaactgaagcagaagattgtcaac
atcctcaccaacaagcatggggcctggggtataccatgccagagtcagctgcatgacttc
tggcgtctcgactactgggaagatgacctgcggcgaaggaggaggtttgtccgaaaccca
tttggctccacccacttggatatagcgtgcaagtcctcacaagaatatgccttaaaggaa
gaaaaggtcgtgaagtccaagctagttttccggagcccaactttggccagtcagaaccca
gaaacagaactggtcctggatggagaagacgataatgtcagcctgctccatgaaaaggag
atggacaacgttggcggtccggtggtcctgagcagctcggcccagcttgtcgcccctgtc
ctggtcgcccgcggaactctgtccatcaccacctctgagatctactttgaggtggacgag
gatgaccctgccttcaaacgggtcgacccgaaggtcttggtgtacacagatggtttgcat
ggcaaatggatgttcagtgagattcgggcggttttttccaggcactaccttctgcagaat
actgcaatggaggttttcatggctaatagaacatctgtcatgttcaactttccggaccaa
gccacagtaaaaaagattgtctattgtctccctcgagtgggagtgggcactagctacgga
ctaccacaagcaaggcggatctccctggcaacccctcgacagcttttcaaatcctcaaac
atgacccagcgctggcagagaagagaaatctccaactttgagtatctgatgtttctcaac
accatagctgggaggacgtataatgacctgaaccagtacccagtcttcccctgggttctc
accaactatgactcggaggaactggacttgacccttccagggaacttcagagatctctcc
aagcctgttggtgcattgaatccaaagcgtgcagcattttactccgaacgctatgagtca
ggagaagaagaccagacacctccctatcattacgactcccactactccactgctgccacc
actctgcattggctcgtcagaatagagcccttcaccacgttcttcctcggtgccaacgat
aacaaattcgaccatcctgatcgcacattttctgccatcacacgctcttggagaaactgt
caaagagacacgtcggatgtaaaagaattgattcccgagttctactatctcccagagatg
tttgttaacagcaatggctaccatttaggaatgagggaagatggaaccatgatctgtgat
gtggacttgccagcctgggccaagaagcctgaagactttgttcggataaacaggatggcc
ctggaaagcgagtttgtgtcatgtcagctgcatcagtggattgaccttattttcggctac
aagcagcgagggccagaagctgtgcgtgccctcaacgtatttcaccacctgacttatgag
ggctccgtcagcttggaaagtattgctgaccctttgctcagagaggccacagaggcgcag
atccagagctttggacagacgccatctcagttgcttatcgagccacatcctccacgcagc
tccgccatgcacctgtgtttccttccgcagagtcctctcatgttcaaggaccagatgcag
caggacgtcatcatggtgttaaagtttccatccaattcgccggttacgcatgtggctgcc
aacaccctgccccatctcactataccagccgtggtcaccgtcacctgcagccgcttattt
gccgtcaatcgatggcacaacactgttggtctccgaggagcaccaggctattctctggaa
caggcccatcatctccctatagagatggattctctggttgccaacagtactggcagcaac
aagcgtcagatcacagacctagtggaccaaagcatccaaatcaccacacactgttttgtg
gtgacagctgacaaccgctacatcctggtgtgtggcttctgggacaagagcttccgtgtg
tactcctctgagacaggcaagctgacccagatcatttttggccactgggatgtggtgaca
tgtctggccagatcagagtcgtacatcggaggcgattgctacattgtttctggttctcgg
gatgctaccctgctgctttggtactggagtggacggcaccatattattggtgacaacccc
aatcacggtgactacccagcaccacgagcagttctgactggtcatgaccaggaagttgtg
tgtgtgtcagtctgcgcagagctgggccttgtcatcagtggagcaaaagagggtccttgt
ctggtccacaccataactggggaccttctacgggaactagaggggccggacaactatcag
tgcccacggctcatctcagtgtccagtgagggtcactgcatcatctattacgagagaggt
cgcttctgcaacttcagcataaatggaaaactgctggcacagatggaggtcaatgattcc
accagggcaattctcctgagcagtgatggacacaaccttgtgacaggtggagacaacggt
gtggtggaagtgtggcaagcttgtgacttcagacaactctacatctaccccggctgtgat
gcagggatccgagccatggatctatcacatgatcaaaggaccttgatcactggcatggct
tctggcagcattgtggcatttaacatagatttcaacagatggcactatgagcatcaaaac
aggtactga
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integrated database retrieval system
