Xiphophorus maculatus (southern platyfish): 102233618
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Entry
102233618 CDS
T02923
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102233618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102233618
03009 Ribosome biogenesis [BR:
xma03009
]
102233618
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102233618
Spliceosome [BR:
xma03041
]
Complex A
U1 snRNP components
U1 related factors
102233618
Complex B
102233618
Ribosome biogenesis [BR:
xma03009
]
Eukaryotic type
Pre-60S particles
Helicases
102233618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
102233618
NCBI-ProteinID:
XP_023205017
Ensembl:
ENSXMAG00000008305
LinkDB
All DBs
Position
16:complement(20424041..20429534)
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AA seq
628 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGGPPRFGGSRSGGGGKFGNPGERLRKKHWNLDELPKFEKNFY
QQHPDVACRSLQEAEQYRRSKVITVKGRDCPNPITQFHEASFPSYVMEVINKQNWTEPTP
IQAQGWPLALSGMDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INIGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINYDYP
NNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLVSVLREANQAINPKLLQMAEERG
GRSRGGRGGDYDRRDRYSSGRRDYGGGRDRDNNRGYNNGPNQSYGVGSQNGGYGGSNGAS
NGYGGGNYNTNGQSNFATNQAGAFAAQNNFQAQQFVPNKPVVQNGTSHPQYQFPQAQVPP
QHPPQQLAPQQHPPPPLVPYPMPPQFSQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggcagagatagagacagaggctatggcggtgga
ccaccccgattcggtggtagccggagtggaggtggaggaaagttcggcaatccaggtgag
cggttgaggaagaaacactggaacctggatgagctcccaaagtttgagaaaaacttctat
cagcagcatcctgatgtcgcctgtagatcactgcaagaagctgagcaatacagaaggtcc
aaagttattacagtgaaggggagggactgcccaaatcccataactcagtttcatgaagca
agctttccctcttatgtgatggaggtcatcaacaaacagaactggactgaaccaacacct
atccaggcccagggttggcctttggctctcagtggcatggacatggttggcattgcacag
actggctctggcaagacactttcttatcttctgcctgcaatcgtgcacattaatcaccag
cctttcttggaacgtggggacggtccaatttgtctggtgttggcccccactcgtgagctg
gctcagcaggtgcaacaggtggctgctgaatatggcaaagcttctcgtctgaagtccacc
tgcatctatggaggcgcaccaaaagggcctcagctccgtgatttggaaagaggtgtggag
atttgcatcgccactccaggcaggctcattgacttccttgaagcaggaaaaacgaacctt
cgcagatgcacttacctggtgctggatgaggcagacagaatgctggacatggggtttgag
ccacagatcaggaagattgttgaccaaattaggcctgacaggcagactctgatgtggagt
gctacttggcctaaagaggttcgccaactggcagaagactttctgaaggagtatgttcag
atcaacattggtgcactgcagcttagtgctaaccataacatcctgcagattgtggatgtc
tgcaatgatggagaaaaagagaataagctaatccgtctgcttgaggaaatcatgagtgag
aaggagaacaagaccatcatttttgttgagacaaaaaggcggtgtgatgacctcactcga
cgaatgagaagagatgggtggccagctatgggaatccatggtgacaaaagccagcaggag
agggactgggtccttaacgagttcaaatttggcaaagcccccatactgatcgccactgat
gttgcgtccagaggcctagatgtggaagacgtgaaatttgtcatcaactatgactaccct
aacaactctgaggactatatccaccgcattggcagaacggctcgtagccaaaagacgggc
acagcctataccttcttcactcccaacaacatgaggcaggccggggacctcgtctctgtt
ctgcgtgaggccaaccaggcaattaacccaaagctcctccagatggcagaagaaagagga
ggtcgttcaaggggcggcagaggtggtgactatgaccgtcgggataggtattcctctgga
aggcgtgattatggcggcggtagggatagagacaacaatagaggatataacaatggacca
aaccagagttatggcgtaggttctcagaacggaggctatggaggcagcaacggtgccagc
aatggatatggtggagggaactacaacaccaatggacagtcaaactttgccaccaatcaa
gcgggagcttttgctgcccaaaacaacttccaggcccaacagtttgttcccaataagcca
gttgtacaaaatggcacaagccatcctcagtaccagttccctcaggcccaggtgcctcct
cagcatccaccccaacaacttgctcctcaacagcatcctccaccgcctctggtgccgtac
cccatgcctccacagttctctcagtaa
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