Xiphophorus maculatus (southern platyfish): 102233942
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Entry
102233942 CDS
T02923
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04140
Autophagy - animal
xma04148
Efferocytosis
xma05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102233942 (vps18)
04148 Efferocytosis
102233942 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
102233942 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xma04131
]
102233942 (vps18)
Membrane trafficking [BR:
xma04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102233942 (vps18)
Hops complex
102233942 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_5
zf-RING_Vps41
zf-RING_16
zf_RING_Vps8
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3H2C3
zf-ANAPC11
zf-RING_11
DUF5600
zf-rbx1
DUF4446
LETM1_C
DUF1664
Apolipoprotein
Motif
Other DBs
NCBI-GeneID:
102233942
NCBI-ProteinID:
XP_005808375
Ensembl:
ENSXMAG00000006768
UniProt:
M3ZX52
LinkDB
All DBs
Position
15:14990320..14997045
Genome browser
AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNIRQNSQQHSRLSSANIGLTHSGFVNVRLEEEKPIFNKQRIDFTPPER
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQLNQTELGRKDDSKVYKLFLDPTGSHLLISL
YSSECLYLNRNTQKVRSLSRWRGHLIESVGWNKLLGNETSTGPILVGTSQGIIFEAEISA
NEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEIERSPENKYFIIATTRKRLFQFVGKVA
EGSEQQGLSTIFSQNQDLLPSFQEFPANMGYSEITFYTAKLRNFPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTPDIDISQNKPISIVLTQFHFLLLLHDRIKAICTLNGQVVYE
DVFPDKFGPLKRMIKDPIGGLVWIYTERAVFRYHIQRESRDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEYCFQNRRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLTELYLNRLGQLESDDNSLIFQETRDEFRQFLSSSKHRDCLF
NNRGTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDNFSAALDVLAKHCDEKLFYK
FSPVLMQHIPKNVVNAWIQMGKRLDPKKLIPALMNYSQMGSAQQINETIRYMEFCVYELN
VTEEAIHNYLLSLYAKYKSDSLLQYLRQAGTHPSEIHYDLKYALRLCAEHGFLQACVLVY
RIMELHEEAVDLALQVDVDLAKSCADLPEDDEEMRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNKHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHNDCLFQEVTPHLSAFKQNRLEE
LQKKLAATTQSSKSRHRPAQKEEGDTASLGKGIGATSREQIISDIDDIVASECAYCGELM
IKSIDKPFIDPQKFEQDKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttctattcttgatgagtatgaggattctcaaaacatcaggcaaaattctcagcaa
cacagccgcctgagctctgctaacatcgggctaacacattcaggctttgtgaatgtcaga
ctggaggaagaaaagccaatattcaacaaacagaggattgacttcactccaccggagagg
ataaatcacttggcagtctgcaacaaccagctctgcatgagtctgggaaaagacacgttg
ttaaggattgacttggcaaaaccagatcaactcaatcaaactgaattaggaaggaaagat
gacagcaaagtgtacaaactgttcctggacccaacaggctcccatctgctgatcagcctg
tatagcagcgagtgtctgtacctcaacaggaacacccagaaggtgcgcagtctgtcccgc
tggagaggccacctcatcgaaagcgtgggctggaacaagctgctgggcaacgagaccagc
acagggcccatcctggttggcaccagtcaagggatcatctttgaagcggagatctctgcg
aacgagggcagcctgttcaataccaacccggatcagtacttcagacaggtccactccctg
gaagaggatggcaagccagcaccagtctgctgcttggagatagagcgaagcccagaaaac
aagtacttcatcattgccaccacccgcaagcgcctgttccagtttgtgggtaaggtggcc
gaagggtcggagcagcaaggtctcagcaccatcttcagtcagaaccaagacctgctgcct
agtttccaggagttcccagccaacatgggatacagtgagattaccttctacacagcgaaa
cttaggaacttccccaaagcgtttgcctggatgatgggtaatggcgttctctatggccag
ctggactatgtccggcccgattccctgctgagtgacgtccaggtatgggaatacacaccg
gatattgacattagccagaacaaacccatatccattgtgctgacacagttccacttcctg
ctgctgcttcatgaccgaataaaggcgatctgcactctgaacggacaggtggtgtacgag
gatgtgttcccagataaatttggcccccttaagagaatgatcaaagatccgattgggggg
ttggtgtggatctacacggagcgggcggttttccgatatcacatccagcgcgagtctagg
gacgtctggcagatgtacatgagcatgaacaagtttgacctcgccaaggagtactgccgc
gaccggcccgaatgcatggacatggtgctagctaaggaggccgagtactgcttccagaac
aggagatacctggaaagcgccaagtgctacgcactcactcagaactacttcgaagaaata
gctctcaaattcatcgaagcaaaacaagaagaagcattgaaggagttcttactgaagaaa
ctgaacaatctgaaacaaagcgagagaacgcagatcaccttgctggtcacctggctgacc
gagctctacctgaaccgactcgggcagctggagagcgacgacaacagcctcatcttccag
gaaacccgagacgagtttcgccagttcctgagcagctccaagcacagggactgtctgttc
aacaaccgcggcaccatttacgacctgctggccagccacggcaacgtggacgacatggtt
tacttctcggtcgtcatgcaggactacgagagggtcatatcccactactgtcagcacgac
aacttcagcgcggccctggatgtgctcgccaagcactgcgacgaaaagctcttctacaag
ttctcgccggtcctcatgcagcacattcccaagaacgtggtgaatgcgtggatccagatg
ggcaagaggctggacccgaagaagctcatcccggctctgatgaactacagccagatgggc
agcgcccagcagatcaacgagaccatccgctacatggagttctgtgtttacgagctgaat
gtcactgaggaagccattcataactacttgctgtcactttatgcaaagtacaagtcagac
tctctgttgcaatatctaagacaggcaggtactcacccctcagagatccactatgacctg
aagtatgcactcaggttgtgtgcagagcatggctttcttcaggcctgtgtgctggtttat
agaataatggaactgcatgaggaggcagtggatctggctttacaagttgacgtggacttg
gccaagtcctgcgcagatctgcctgaggatgacgaggagatgaggaaaaagctctggctg
aagatcgccaggcatgtggtgcaggaggagaaggatgtgaagaaagccatgaactgtctg
tccagctgcaacctgctcaagatcgaagacatcttgcctttctttccagattttgtcacc
attgaccactttaaggaggcaatctgcagctccctggaggagtacaacaagcacatcgag
gagctgaagcaggaaatggaggaagccacggagagtgctaaacgaatcagggaagacatc
caggaaatgaggaataagtacggcgttgtggattcccaagaaaagtgtgcggcatgtgac
ttcccgttactcaacaggcctttctatttgtttctgtgtggacacatgttccataacgac
tgcctgtttcaggaagtgacccctcacctgtcagccttcaagcagaatcgcctggaagag
ctccagaagaaactggctgctacaacacagtcctctaaatctcgccaccgtcctgctcaa
aaggaggaaggggacacagccagtctgggaaagggcatcggggcaactagccgtgagcag
atcatatcggacatcgatgacatcgtagcgtctgagtgcgcgtattgtggcgaactgatg
atcaaatccatcgacaagcctttcattgatccacagaaatttgaacaggacaaatccagc
tggctgtga
DBGET
integrated database retrieval system
