Xiphophorus maculatus (southern platyfish): 102234491
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Entry
102234491 CDS
T02923
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102234491 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
102234491 (msh2)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102234491 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
ENT
Motif
Other DBs
NCBI-GeneID:
102234491
NCBI-ProteinID:
XP_023196952
Ensembl:
ENSXMAG00000014388
UniProt:
M4AIX9
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Position
10:10411470..10431800
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AA seq
937 aa
AA seq
DB search
MAVQPKQNQNLSLDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAKEVF
KTNGVIKYLGSGSRKLESVILSKLNFEAFAKDLLLVKQYRVEVYRNQSKSSKEHDWRIEY
KASPGNLTQFEDILFGGGSGGEGCAGVVAVRFATGADGQRVVGVGYVDAAQRTMGVCEFP
DNEIFSNLESLLVQISPKECLLAQGECSAEGNKLREVVQRGGVLVSDRKRAEFSSKDIVQ
DLNRLLRSKRGETMASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLGLGQY
MRLDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEER
LDLVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVYQAVSHIPALIT
ALESYSGSYKVLLHAVFTSPLTDLQTDFIKYQEMIETTLDVNQIEHHEFLVKASFDPALS
ELREKMDALEKSMQAVLSSAARELGLEAGKTVKLESNAILGFYLRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNEEYTRNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVI
AQLDAVASFAVASVSAPVPYVRPQLLDDGRRRLELLQARHPCMETDADTAFIPNDISFVQ
GEKSFYIITGPNMGGKSTFIRQVGLIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQV
KGVSTFMSEMLETAAILRSATENSLIIIDELGRGTSTYDGFGLAWAISEHISSKINCFCL
FATHFHELTALAAQQPAVHNLHVTALTTHNTLTMLYRVKPGVCDQSFGIHVAELACFPPS
VLAVAREKAEELEEFQEPVGDDSKRDEEPEVKRRRTDKQVGEKLIQDFLEKVKALPVVTM
TEEEVKAELRRIKQDLVAKNNTYISEILARCAPVKTA
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaagcagaaccagaacctgtccctggacagcgcggccgaacacggc
tttctgaacttcatattctctatgccggagaaaccggacacaaccttcaggatattcgac
cggaacgactactacaccgtccacgggaaagacgccatatttgctgccaaggaggttttt
aagactaacggagtcatcaaatatctgggctcagggagccgtaagctggagagcgtgatc
ctgagcaagctgaacttcgaggcctttgcgaaggatctgttgctggtgaagcagtaccga
gtggaggtatataggaaccaaagcaagagcagcaaggagcacgactggaggatcgagtac
aaggcctctccaggaaacctgacccagttcgaggacattctgttcggcggaggaagcgga
ggcgagggatgcgcgggagtggtcgccgtgcggtttgcgacgggagccgacggacagcga
gtggtcggggtcggctacgtggacgcagcccagaggaccatgggggtgtgtgagtttccg
gacaacgagatcttctccaacctggagtctctactcgtccagatcagccccaaagagtgt
ctgctggctcagggagaatgcagcgctgaggggaacaagctccgggaggtggtgcaacgt
ggcggcgttctggtctctgacaggaagagagcagagttcagcagcaaggacatcgtccag
gatctcaacaggctactgcgatctaagagaggagagacgatggcgagcaacacgctgcct
gaactggacaagcaggtggccatgtcatgtttggctgctgtggttcgattcctcgaactt
ctctccgatgagtcgaacttcaactctttcagcctcacaacgctggggctggggcagtac
atgaggctggacaacgccgccgtcagggctctcaacctcttccagggttcgcctgacgac
accagtggagctcattcattggccggtttgttgaacaagtgccgcactccgcagggtcag
cggctggtcaaccagtggatcaaacaaccacttatggacaaaaccaaaatagaggaaaga
ctggaccttgtggagagttttgtgtgcgactcggagctgaggcagacttgtcaggaggat
ctgctgcgacgctttccagatctccaccgccttgccaaaaagtttcaccgtcacacggcg
acgctgcaagactgttaccgcgtctaccaggccgtgagtcacatccccgctctgatcacg
gctctggagagctactcaggcagctacaaggtgttgctgcacgcggtgttcacctcgcct
ctcactgacctgcagacggatttcatcaagtaccaggagatgattgaaaccactctggac
gtgaatcagatcgaacaccatgagttcctggtgaaggcgtcgttcgatcccgctctgagt
gagctcagggagaagatggacgctctggagaaaagcatgcaggctgtgctgagcagtgca
gccagagaactaggtctggaagccggtaagacggtgaagctggagtccaacgccattctg
ggcttctacctgcgggtcacgtgcaaggaggagaagagtctgaggaacaacaagaagttc
accacgctggatgttcagaagaacggcgttcgcttcacaaacagcaagctgagctctctg
aacgaggagtacaccaggaacagggaagagtacgaggaggcccagaacgccattgtcaaa
gagatcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcatc
gcgcagctcgacgcggtggcgagcttcgccgtggcgtcggtgtccgctccggttccgtac
gtccggccccaactgctggacgacggccgcaggcgtctggagctgctgcaggccagacat
ccctgcatggagacggacgcggacaccgccttcatacccaacgacatcagcttcgtccag
ggggagaagagcttctatattataacaggaccaaacatgggagggaagtccacatttatc
cgtcaggtgggtctgatcgcgctgatggctcagatcggctgcttcgtgccgtgcgagaag
gctgagctcagcgtgatcgacagcgttctggcccgagtgggagcaggagacagccaggtg
aagggagtgtccaccttcatgtctgagatgttggaaactgccgccatcctccgctctgcc
acggaaaactcgctcatcatcatcgatgagctcggcaggggaacctctacgtacgacggc
ttcgggctggcctgggccatcagtgaacacatctcctccaaaatcaactgtttctgcctc
ttcgccacacacttccacgagctgacggccttggcggcacagcagccggccgtccacaac
ctgcacgtcaccgccctgacgacccacaacacgctcacaatgctgtaccgagtcaaacca
ggtgtgtgcgaccagagttttgggatccacgtcgctgagctggcctgcttccccccgtcg
gtgctggccgtggcgagggagaaggcggaggagctggaggagttccaggaacctgtgggg
gacgattcgaagcgggacgaagagcccgaggtcaagagacggcggacagataagcaagtg
ggagaaaagctgatccaggacttcctggagaaggtgaaggcacttcctgtcgtcaccatg
actgaggaggaggtgaaggcagagctcaggagaataaagcaggacttggtggccaaaaat
aacacgtacatcagtgagatacttgcccgctgcgctcctgtaaaaactgcctga
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