Xiphophorus maculatus (southern platyfish): 102235267
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Entry
102235267 CDS
T02923
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xma03009
]
102235267 (ddx55)
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102235267 (ddx55)
Ribosome biogenesis [BR:
xma03009
]
Eukaryotic type
Pre-60S particles
Helicases
102235267 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
SLFN-g3_helicase
Cas3-like_C_2
Helicase_C_2
SBF_like
YbjM
Motif
Other DBs
NCBI-GeneID:
102235267
NCBI-ProteinID:
XP_005815598
Ensembl:
ENSXMAG00000011731
UniProt:
M4ABE5
LinkDB
All DBs
Position
8:complement(24440978..24448369)
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AA seq
588 aa
AA seq
DB search
MENITDGTWDTLSVQLNEKILQTLEEMKFTYMTPVQSACIPLFMNNKDVAAEAVTGSGKT
LAFVIPIIELLLKREEKLKKKQVGALVITPTRELALQISEVMGMFIQKFPEFTQILLIGG
SNPVEDVEKFKEHGGNIVIATPGRLEDMFRRKSEGLELASAVRSLDVLVLDEADRLLDMG
FEASLNSILSYLPKQRRTGLFSATQTQEVEKLVRAGLRNPVRITVKEKGQAASATQKTPA
RLSNYYTTCRADDKFNHLVAFLRQHKHEKQLVFFSTCACVEYFGRALESLVKKVTIHCIH
GKMKNKRSSIFSDFRALKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRTA
RIGNHGNALVFLLPMEEPYVNFLSINQKCPLQKMSAIKDVVDVLPKVKAMALADRAMFDK
GMRAFVSYVQAYAKHECSLIFRVKDLDFVSLANGFALLRLPKMPELKGKTFPDFVETTVD
TDSIRYKDKNRQKQRQKMLAELKDREKTELPKKNFVKNKAWSKQKCKKERRKKRAAKRKH
DEDSDMDEEYMKELLEDTRLLKKLKKGQISEEDFEQQLTNSKQEAGGP
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggagaacattacagacgggacatgggacaccttatctgtccaactaaacgagaagatt
ttacaaacacttgaggaaatgaaatttacttacatgacacctgtacagtcggcttgtatt
ccactgttcatgaacaataaagacgtcgctgctgaggcggtcaccggcagcgggaagact
ttggcttttgtcattcctattatagagctgctgctgaaacgcgaggagaaactcaagaag
aagcaggtcggtgctctggtgatcactcccacacgagaactggccctgcagatcagtgaa
gtgatgggaatgtttatccagaagtttccagagttcacgcagattttgctgattggtggc
agcaacccagtagaagacgtggagaagtttaaagagcatggcggcaacattgtgattgcg
acgcccggccgcctggaggacatgttcaggaggaagtcagaggggctggaactggccagc
gcagtccggagcctggatgttctggttctggatgaggctgacaggctgctcgacatgggc
tttgaggccagcctgaacagcatcctgagctacctgcccaaacagagacggacaggcctg
ttctcagccacccagactcaggaggtggagaagctggtgagggccggcctcaggaacccc
gtccgcatcaccgtcaaagagaagggtcaggctgcctcggccacccagaagaccccggcc
cgcctctccaactactacaccacttgcagagcagacgacaagttcaaccacctggtggcg
tttctaaggcaacacaagcatgagaagcagctggtcttcttcagcacctgcgcctgtgtg
gagtacttcggccgagccctggagtcgctggtcaagaaggtcacgatccactgcatccac
ggcaagatgaaaaataagcgcagcagcattttttcagacttcagggccttaaagagcggg
atcttggtgtgcaccgacgtcatggccagaggcatcgacatccccgatgtgaactgggtt
ctgcagtacgatccccccagcagcgccagtgcctttgtgcatcgatgcgggagaacggcg
cgtatcggtaaccatggcaacgccctcgtcttcctgctgccaatggaggaaccctatgtc
aacttcttgtccatcaaccagaaatgcccgctgcagaagatgtctgctataaaggacgtg
gtggacgtgctgcccaaggtgaaggccatggccctggctgaccgcgccatgttcgataaa
ggcatgagggcctttgtgtcgtacgtccaggcttacgccaaacacgaatgcagcctcatc
ttcagagtaaaagatctggatttcgtgtccctggccaacggcttcgcgctgctccgcctg
ccgaagatgcccgagctgaaggggaaaacgtttcccgactttgtggagacgacggtggac
acggacagcatccgctacaaggacaaaaacagacagaagcagaggcagaagatgctggcc
gagctgaaggacagagagaagacggagctgcccaagaagaacttcgtcaagaacaaggcc
tggtccaagcagaagtgcaagaaggagcgcaggaaaaaacgcgccgccaaaaggaaacac
gacgaggactccgacatggatgaagaatacatgaaggagcttttagaagacactcgcctc
cttaagaaactaaaaaaaggccagatcagcgaggaagacttcgagcaacagctcacaaac
tcaaagcaggaagcaggcggaccataa
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