Xiphophorus maculatus (southern platyfish): 102235710
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Entry
102235710 CDS
T02923
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102235710
03015 mRNA surveillance pathway
102235710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102235710
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102235710
5.6.2.5 RNA 5'-3' helicase
102235710
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102235710
mRNA cycle factors
Common to processing body (P body) and stress granule
102235710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
nSTAND3
ATPase
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
102235710
NCBI-ProteinID:
XP_023191633
Ensembl:
ENSXMAG00000001703
LinkDB
All DBs
Position
6:complement(1729480..1754929)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDSEESELLGADTQGSEYDFTDFTLPSQTQTQGQTHGQLDNQVNG
SDVVLQNGDDPVGKASQLLAELNFEEDEEDAYYSKDLPLHACCYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQENITIRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVLIKCQLPKRFTVQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGTGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMESFSLVDVGSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVI
CCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGTKQLILVGDHCQLGPVVMCK
KAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKK
GFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGII
TPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFL
NDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQF
NKPRKLVNAINPGGRFMSTAMYDAREALIPGSVYDRSSNGRPSNMYFQTHDQIGMIGSGP
GPMSSLNLPIPFNLMMPPIPPPGYLGQLNGPSAGRGGSMKNKSANTCGSGTRGARQRNRG
DVGIDGGHMTGSQASQDQGSQPFSQGPLTQGYISMSQPSQMSQPVLSQPELSQDSYLGDE
FKSQFDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagaccctgacgttcctggactccgaggag
tcggagctgctgggagcggacacccagggctccgagtacgacttcaccgattttaccttg
cccagccagacgcaaacgcagggccagacccacggccagttggataaccaggtcaacggt
tcggatgttgtgctgcagaatggagatgaccctgtggggaaagccagccagctccttgca
gaattaaactttgaagaagatgaagaggatgcttactacagcaaggacctcccattgcat
gcctgctgttactgtggaattcatgatccagcctgtgtggtctactgcaacaccagcaag
aaatggttctgtaacggccgtggaaatacatccggcagccatatcgtgaaccacctggtg
agggccaagtccaaggaggtgaccctgcacaaagatggccctctgggagagacggtgttg
gagtgctacaactgtggctgccgcaacgttttcttgctgggcttcatcccagccaaggcc
gactcagtggtggtgttgctgtgcagacaaccgtgtgctagtcagagtagcctgaaggac
attaactgggacagctcccagtggcagccactcatccaggaccgctgcttcctgtcttgg
ctggttaaaatcccttcagaacaggagcagctccgggcccggcagatcaccgcccagcag
atcaataagctggaggagctgtggaaggaaaatcccactgctactctggaggacctggag
aagcccggagtggacgaggagccacagcatgtcctcctgcgttacgaggacgcctatcag
taccagaatatctttggtcctcttgtaaagctggaggctgactatgataagaaactgaaa
gagtcacagactcaagaaaatataacgattagatgggacctgggcctgaataaaaaaagg
attgcttatttcacccttcccaagactgactctgatatgcgactgatgcagggtgatgaa
atctgcctcagatataaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagttcctgacaactatggcgatgagattgccattgagcttcggagtagtgccggagct
ccggtggagatccctcataacttccaggtggactttgtgtggaagtccacctcctttgac
aggatgcagagcgccctgaaaacatttgctgtggatgagacttcagtttctggctacatc
tatcacaagttgctgggacacgaggtggaggacgtgctcattaagtgccagctgcctaaa
cgcttcactgttcaaggcctgcctgacctcaaccactctcaggtctatgctgtgaagaca
gtgttgcaacggcccctcagtctgatccagggcccccccggcacagggaagacggtcacc
tcagccaccatagtgtaccatctggctaggcagggaaccggaccagtgctggtgtgtgct
cccagtaacattgctgttgatcagctgactgagaagattcaccagacggggctgaaggta
gtgagactttgtgccaaaagcagggaagccatagattctccggtgtccttcctggctctg
cacaaccagatccggaacatggaaagtttctctctggttgatgtgggcagcatgccggag
ctgcagaaactccagcagctgaaggatgagactggagagctgtcgtcctctgacgagaag
cgctacagagctctgagacgcactgctgagcgggagctgctcatgaatgccgatgtgatc
tgctgcacatgtgttggagcaggagatccccgtctggctaaaatgcagttccgatcgatc
ttgattgatgaaagcactcaggccacagaaccagagtgcatggtgccggttgtccttggg
accaaacagctgattctggtgggggatcactgccagctggggcctgtggtgatgtgtaag
aaggcagcaaaagcaggcctgtcccagtctctctttgagcgccttgtggttctgggcatc
aggcccatccgtctgcaagtccagtaccgcatgcacccggccctcagcgccttcccctcc
aacatcttctatgagggctccttgcagaatggagttactgctgctgatcgggtgaaaaaa
ggctttgatttccagtggccacagccagacaagcccatgttcttctatgtcacccaaggc
caagaggagatagcgagctctggaacatcctatctgaacagaactgaggctgccaatgtg
gagaaaataaccacaaggttactgaaagctggggctaaacccgaccaaataggcatcatc
actccctatgaaggacagcggtcctacctggtccagtacatgcagttcagtggctccctt
cataccaagctctaccaggaagtggaaattgccagtgtggatgctttccaaggcagagag
aaagatttcatcatcctttcctgtgtgagagccaatgagcaccagggcattggcttcctc
aatgaccccagacgtctcaacgtggcgctcaccagggcccgatatggagtgatcattgtg
gggaatccgaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaag
gagcagaaggttctggtagaaggcccgttaaacaacctgagagagagcctcatgcagttc
aacaagccacggaagctggtcaacgccattaacccgggtggccgcttcatgagcacagcc
atgtatgatgccagggaggctctgattcctggctctgtttatgaccgcagcagcaacggc
cgaccttccaacatgtatttccagactcatgatcagatcggtatgatcggttccggaccc
ggtccaatgtcgtccttgaaccttcctattcccttcaaccttatgatgcctcctatccct
ccacctggttatttaggacagctaaacggcccctctgcaggtcgtggtggaagcatgaag
aataaatcagccaacacatgcggcagtggaactcgaggtgctcgtcaaagaaaccgtgga
gatgtgggaatagacggaggtcacatgactggcagccaggctagccaggaccagggctcc
cagccgttctcccaggggcccctcacacaaggctacatcagcatgagtcagccctcccag
atgagccagcccgtgctctcccagcctgaactctcacaggacagttacctaggagatgaa
ttcaagtcccagtttgatgtggctctgtcccaggactccacataccagggcgaacgggcc
taccaacatggagtgactggactgtcccagtactag
DBGET
integrated database retrieval system
