Xiphophorus maculatus (southern platyfish): 102236171
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Entry
102236171 CDS
T02923
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04382
Cornified envelope formation
xma04510
Focal adhesion
xma04512
ECM-receptor interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102236171 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102236171 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102236171 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102236171 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102236171 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102236171 (col4a5)
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
102236171 (col4a5)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102236171 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
102236171
NCBI-ProteinID:
XP_023201800
Ensembl:
ENSXMAG00000014667
LinkDB
All DBs
Position
14:complement(8143560..8202286)
Genome browser
AA seq
1688 aa
AA seq
DB search
MTRGLRRLRQPAWVVIWLVLYATIQLSDSAACNGCGGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGTRGEKGSDGPSGPSGPKGIRGPPGLPGFPGTPGLPGLPGQDGAPGP
RGVPGCNGTKGEPGFPGSSGIPGRQGLPGPPGLPGEKGDRGDVFFTNNFGQRGTDGLPGL
PGSPGSPGPIGFPGPTGPPGLQGYQGLPGPPGPPGPKGNMGLNFEGPKGDKGDQGLPGPP
GPPGPGQGEQIRPPPTEIQRGDKGDPGPPGAPGDPGNPGPPGPYGGQKGEKGEPGEAGKR
GKPGKDGDPGAAGYPGLKGESGNPGLPGRDGERGQKGDRGFPGPPGPLIRPQNGAVVGQK
GEPGVPGTPGAKGDRGPQGFSGPPGSPGVPGIGGSGPPGSPGFPGDRGQKGEPGIPSVAL
PGPPGRPGSPGIPGPQGPPGPPGYSSPIDNCLPGDPGLPGVQGAKGFPGEQGQKGQKGET
CVNCIDGGNPVPGPPGPPGPPGFPGIPGPQGFKGDLGFSGTPGLGGPPGIPGPTGAPGFP
GEKGEPGDTFGGGGVKGEKGDSGFPGPPGLPGLDGRPGRDGAPGPPGSRGAPGSQQLKGD
RGPPGDTGPAGIPGDRGPPGSPGYGIPGAPGEKGVQGNSGGPGIPGEPGRKGEPGLTVGE
KGQQGPKGMDGSPGLPGPQGQPGSDGQPGLTGLPGPKGEPGQPGIGLPGPAGVKGYPGIP
GQPGAPGKVGRMGIDGLPGPPGFPGPKGEAGFGLPGPPGTPGVKGANGFPGQKGDPGFPG
TPGGPGRPGFDGGPGLKGEPGSPGQPGPRGPPGSSIGGVPGAPGLPGPPGPMGPPGYPGG
NGEKGDPGPPGLDIPGSPGDRGNPGFPGPPGPIGIPGPPGGPGRDGAPGFPGPKGDMGPM
GPPGPSGGPGSPGGPGAPGLKGEPGFPGSNGIPGGPGSKGEKGDQGSPGFPGPSSPVDIT
GAKGDPGTPGLPGLPGPKGIAGIAGDPGLPGQDGRPGIPGPPGLKGEPGFPGSPGGPGSP
GQKGAMGDMGIPGPLGLKGTPGLQGRPGTPGQPGVPGLQGPKGDPGSAGVGPPGPQGQKG
DPGQPGFPGGPGSKGGPGTPGLPGLPGLPGAKGDVGLAGFQGPPGVPGPKGLDGGPGAPG
LSGAPGRPGESGRPGPPGQVGEKGQPGRDGIPGPAGIKGEPGISGFGVPGPPGIPGSPGD
KGDPGLPGPTGGPGFSGPKGDSGFPGPPGRPGASGPPGPPGLPFQGPKGNQGPPGPPGRA
GPAGPPGVPGPEGPRGLPGSGGVKGDKGNPGNPGLPGQSGQKGDPGFPGAPGPSGGPGSP
GQKGNIGFPGVSGFPGPKGDPGLPGPSGLPGDPGGDGAPGPPGDPAPSRPVSYTKGDPGL
PGPQGSPGATGPPGPPGAPGSSGLPGPSGDPGTPGPPGFNGPPGRKGDTGPSGQPGQKGN
PGPPGSDGPQGPQGLPGSGSVAHGFLLTRHSQSEITPECPFGTNFIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSPMPFMFCNINNVCNFAARNDYSYWLSTLEPMPPSMEAVTGESI
KPYISRCSVCEAPAMVIAVHSQTIQIPSCPANWRSLWIGFSFMMHTSAGAEGSGQALASP
GSCLEDFRSTPFIECHGRGSCNYFSNSYSFWLATVEKLDMFKKPQSETLKAGNLLTRVSR
CVVCMKAT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgactagaggcttgaggcgcctgcgacagcctgcctgggttgtgatttggctcgtactg
tacgccaccatacaactatccgactctgcggcttgcaatggatgtgggggctccaagtgt
gactgcagtggagtgaaaggagaaaagggggagaggggtttcccaggtcttaccggacag
ccaggggtcccagggttccccggacctgagggaccaatcggaaccagaggagagaaggga
agtgatggaccttcaggaccatctggtccaaaaggaataagaggaccgcccggattgcct
ggatttccaggaacgccaggacttccaggtctgccaggacaggacggagccccgggcccg
aggggagtgcccggttgtaacgggacaaagggtgaacctggttttccaggaagttcagga
atacctggaagacaaggacttccaggtccacctggtctcccaggagaaaagggagaccgt
ggagatgtgtttttcaccaacaattttggacaaagaggaacagacggtttgcccggattg
ccaggatctccgggcagtcctggacccataggttttccaggcccgactggccctccagga
ctccaaggctaccagggtcttccaggtcctccaggtcctcctggacctaagggaaacatg
ggtttgaactttgaaggacccaaaggagacaagggtgatcaagggttgccgggtcctccc
ggccctcctggaccaggtcagggggaacagatcagaccaccaccaacagagatccagaga
ggggacaagggtgaccctggccctccaggtgcaccaggtgacccaggcaacccaggtcca
cctggtccctatggtggccagaagggagagaaaggagaaccaggagaagcaggaaaacga
ggaaaacccggcaaagacggagacccaggagctgcaggatacccaggactcaaaggagag
tctggaaatccaggtctcccaggccgagatggagagagaggacaaaaaggcgaccgagga
tttccgggacctccagggccgttaattcggcctcagaatggagctgttgttggtcagaaa
ggtgaacccggtgttcctggaactcctggagctaaaggagatagaggaccacaaggtttc
tcagggcctccgggatcaccaggggttccaggcataggcggcagcggtcctccgggttct
ccaggtttccctggagacagaggtcagaagggagagcccggcattccttcggttgccttg
cccggtcccccaggacgtccgggaagtcccggaattcctggtcctcaagggccgcctgga
cctcccggctatagctcaccgatcgataattgccttcctggagatcctgggcttcctgga
gtccagggtgcaaaaggtttccctggagagcaaggccagaaaggtcagaagggagaaacc
tgtgtgaactgtattgacggaggcaatcctgtacctgggcccccagggcctccaggaccg
ccaggcttcccaggcattcctggcccgcaaggtttcaagggagacctaggtttttcagga
acaccaggccttggtggaccccctggtattccaggtcctacaggtgctccaggtttcccc
ggagaaaaaggagagccaggagataccttcggaggtggtggtgtgaaaggagagaagggt
gacagtggtttccctggaccacccggtctgcctggcctggatggtcggcccggtcgtgac
ggagcgcctgggcctcctggctccaggggagctcctgggtctcagcagttaaaaggagac
cgaggtccccctggtgacacaggtccggccggcatcccaggagacagaggtccgccaggc
agccctggttatggaatcccgggtgcgccaggggagaaaggtgttcaaggcaactcagga
ggacctggcattcccggagaaccaggtcgaaaaggcgaaccaggtctgacggtcggagag
aagggtcagcaaggacccaaagggatggatggcagcccagggttgcccggtccacaaggt
cagccaggttcggatggacagcctggtttaacaggtttgcctggaccaaagggtgaaccg
ggacaaccgggcatcggccttccaggtcctgctggagttaagggatacccgggtattccg
ggccagccgggagcacctggaaaagtagggagaatgggaatagatggactccccgggcca
ccagggtttcctggaccaaagggtgaggcaggctttggacttcctggtccaccaggtaca
cctggagtaaaaggagctaatggattccctggacaaaagggagatcctggtttccccggc
accccaggtggaccagggcgacctgggtttgatggcggaccaggacttaaaggggagccc
ggctcaccaggccaacctggacctcgtgggccccctggaagctcaataggtggtgtacca
ggtgctccaggccttcctggtcccccagggccaatgggaccaccaggatacccaggagga
aatggagagaaaggagacccaggtccaccaggcttagacatccctgggtccccaggtgac
agagggaatcctggttttcctggccctcctggaccaataggaatcccaggaccccctgga
ggacctggaagggacggcgcacctggatttccaggtccgaaaggtgacatgggtccaatg
ggacctccaggaccatcagggggacctggctctccgggaggacctggtgcaccaggccta
aaaggtgagccaggatttccaggcagtaacggcatcccaggtggacctggttctaaagga
gaaaagggagaccaaggctccccgggattcccaggacccagctcgccagtagatataaca
ggggctaaaggagatcctggaactccaggattaccaggccttcctggacccaaaggcatc
gcaggtatagctggtgaccctggattgcctggacaagatggacgccctggcatccctgga
ccgccagggcttaagggagaacctggttttccagggagtcctggtggtcctggatctcca
ggtcaaaaaggcgcaatgggagatatgggaattccaggacctctggggttaaaaggcaca
ccaggtcttcaaggtcggccaggaaccccaggtcagccaggagtacctggcctccaagga
ccaaaaggtgacccaggttctgctggcgttggaccacccggaccacagggacaaaaggga
gatccaggtcagcccggattcccaggaggtcctggatctaaaggaggtccgggaacacct
ggccttcctggtttaccagggctaccaggggctaaaggagatgtaggccttgcaggattc
caaggtcctcctggtgtccccggtccaaagggtcttgatggtgggcctggtgcccctggt
ctctcaggagctccaggcagaccaggagagtctggtcgaccagggccaccaggacaggtt
ggggagaagggtcagccgggaagagatgggatcccaggaccagccggtatcaaaggagaa
ccaggaatttctgggtttggcgttccaggtcctcctgggattccaggatcgccaggtgac
aaaggagacccaggccttcctggtcctactggaggcccaggattttccggcccaaaaggg
gacagcggctttccaggtcccccaggtcgtccaggtgccagtggccctccaggtcctccg
ggactgccattccagggccctaaaggaaatcaaggaccccctggaccacctggaagagca
ggccccgcaggtcctccaggtgtgcctgggccagagggtccccgcggtctcccaggaagt
ggcggcgttaagggagacaaggggaaccccggaaatccgggtctgcccggccagtctggt
caaaaaggagatcccggttttccaggagcaccgggcccctctggtggtcctggtagccct
ggtcaaaagggaaatataggatttccaggcgtttccgggttcccaggaccaaagggagac
ccaggacttcctggtcccagtggacttcctggagatcctgggggcgacggagcacctggc
cctcctggagatcctgcgccttcacgacctgtttcttatacgaaaggagatccaggactt
ccgggtccacaaggaagcccgggagctacaggtccacccggtccgcctggagcccctgga
tcctcaggtctaccaggcccctctggagatcccggtacacctggtcccccaggcttcaac
ggcccacctggcaggaagggagacactggaccctcagggcaacctggccaaaagggcaac
cctggcccacctgggtcagatggtccacagggcccgcagggtcttccgggctcagggtca
gtagcccacggcttcctcctcacccgacacagccagagtgaaataacgccagagtgtcct
ttcggaaccaacttcatctacgacggatattccctgttgtacgtgcaaggcaacgagagg
gctcacgggcaggacctcggcaccgccggcagctgtctgcgccggttcagtcccatgcct
ttcatgttctgcaacatcaacaacgtctgcaacttcgctgcccgtaacgactactcctac
tggctgtcaactttggagcccatgcctccgtctatggaggctgtgactggagagagcatc
aagccttacatcagcaggtgttctgtgtgtgaagctccagccatggtgattgcggtccac
agccagaccatccagattccctcttgccccgcaaactggagatccctgtggatcggattc
tccttcatgatgcacactagcgcaggggccgagggctccggtcaggccctggcctccccc
ggctcctgcctggaggacttccgcagcacgcccttcatcgagtgccacggcagagggtcg
tgtaactacttcagcaactcctacagcttctggctggctactgtggagaaacttgacatg
ttcaagaaaccccagtcagagacgttaaaggcaggtaacctgctcacacgtgttagccgc
tgtgtggtttgcatgaaggcaacgtaa
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integrated database retrieval system
