Xiphophorus maculatus (southern platyfish): 102236204
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Entry
102236204 CDS
T02923
Name
(RefSeq) versican core protein-like
KO
K06793
versican core protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04514
Cell adhesion molecule (CAM) interaction
xma04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
102236204
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102236204
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xma00535
]
102236204
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102236204
04091 Lectins [BR:
xma04091
]
102236204
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
102236204
Glycosaminoglycan binding proteins [BR:
xma00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
102236204
Lectins [BR:
xma04091
]
C-Type lectins
Lecticans
102236204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
EGF_TEN
Sushi
hEGF
EGF_2
Ig_3
I-set
EGF_CA
Motif
Other DBs
NCBI-GeneID:
102236204
NCBI-ProteinID:
XP_023199092
Ensembl:
ENSXMAG00000008743
LinkDB
All DBs
Position
12:19702343..19731273
Genome browser
AA seq
2730 aa
AA seq
DB search
MILNIKHILWLYYLCDAAYATTSNTLSIIQPISGSLSGKVNLPCFFSTIPTSAPVIGTNR
TANYGKDYLRIKWTKIKGQEKSTVLVMQNGVIKMNPIYRNRVSVPSHPEDVGDASLTMVK
LRASDAGTYSCEATYGIEDTHDIVNLDVSGVVFHYRASPSRYTLSYEKAVQTCKDIGASI
ATYSQLKAAYEDGFDQCDAGWIADQTVRYPITRPRDGCLGNLKMIPGVRTYGVRNPSETY
DVYCYVDKLDGEVFYAPAAGKLTFLEATEECKKHKAVLASTGQLHAAWRMGLDRCDYGWL
SDGSVRHPVVHPRIPCGGGLMGVRTLYRYRNQTCFPEPSMKFGAYCFRGGRDTINQTFLV
DVSVQEVITTTTTTTRSTTVSTTSFDTTAEAEKSSDYDPTYVTSMFSVSMSPPQPTPPDQ
DAQLITTVAPTIIEDSDDKDSISDIYINYSNSFGTVGPVPSHGEEITEIHMTKETTGSTA
SFEDPDSHSVIEISTIKPDVLLPDDSLNTAGRFAEGKTEKTIVTHRMITDISSKITDAPT
ESTEMTRKGAFISSESTPFIAAPGFQLTTPGDYEDGTITDIFLQATPPFQPFPQIIDQTA
METSTPTTSGTTSRYNTVPEDEISTTEITETLDIERQTIQKTQEADSLATSGDPNVASRF
PVDSRAFTEEVALSTTEHTLSESSSRRTEHTAETLTEDDTLGSSGAERFTFSSTTSAETS
TLKITPSVVTEAQIQNISESRTSGENITKSTETPITKTTSGSSAFNILSVSTSRKAETSD
TSKTDVSSASALQSTEEPTSMSSETYQTLATLKLQETSAVPVESSKSPITREDRTSKPTS
EMSSRDIASSTGSSLFSTEKTTNLLPKDDDSVQTGQTTTPSLSTVTGRTESSSAASPVDR
DYTRGPTIDMYTPVSTVAGLSSSDIVNETTQSPEAMTIQVSTEPETSGEGSAAFADKSVV
TIAIAFPTSAVSDGKPMSPSTLSPITPFVSSSTTLQDQYDELNTMFVLVESIPLISESSI
QPDTASKLIVTDPESAGQTHSNVTDESVKTTAVYTTIGTKSASVSESYTSETSDVSKTAV
TPAVLLRSTAKPTLESTETEQTFTTSHSQAKSETSFDTSSSAITDGRTTNPYTSGYPEEM
SSKHMASPTGSSLISPETTTAEQIDSFSTEQRTLPSVSSLTEKPEKSVGATTEDMDGSGT
VSTDLFTSSITVIGGSSSLYSIDTTTVTTSPESESASVRTEQGTSGENITKSTETPITKT
TSGSSAFNILSVSTSRKAETSDTSKTDVSSASALQSTEEPTSMSSETYQTLATVKLQETS
AVPEESSKSPITREDRTSKPTSEMSSRDIASSTGSSLFSTEKTTNLLPKDDDSVQTGQTT
APSLSTVTGRTESSSAASPVDRDYTRGQTIDMSTPVSTVAGLSSSDIVNETTQSPEAMTI
QVSTEPETSGEGSAAFADKSVVTIAIAFPTSAVSDGKPMSPSTLSPITPFVSSSTTLQDQ
YDELNTMFVLVESIPLISESSIQPDTASKLIVTDPESAGQTHSNVTDESVKTTAVYTTIG
TKSASVSESYTSETSDVSKTAVTPAVLLRSTAKPTLESTETEQTFITSHSQAKSETSFET
SSSAITDRWNTNPYTSGYPGEMSSKHMASPTGSSLISPETTTAEQIDSFSTEQRTLPSVS
SFEVTTRLSTNEPNFSFTSEEVISPESDYFNKVEYSAFEGSADIDDTMLEMQTEAQQPFV
EISSLAISAASLSDAKHAELTTKSHNDYFVATDEAETDETESPSLTSLSGTQPAKKLFSS
TLAPHMTNRETHFADPSIGNGSFDANPSESTFQAVSDATFGDMSDETETLVSIKTTFSEQ
ISKKGVEHFSNTENPLSFEPIKHPDTRTKSPDKDGVAIEEEATQSSHKTEYVINDHTVNS
SSSDTNIKYILSKSTPSPGIRYHSNKEQQVVIVMPSHDKTETGQTKQMPTMILHPSEPSS
SASILFTEDTKDEDKLFSGVTYNLRQESSTSKVITKDNIFFNFDTISAVSSSPFYPTIRT
EEVGVDSAITITQEMNLREEPEGSGAVNAPFFTPSPVTTDPVSVTDLSRSFLLSSTQATT
ESTYSSSKEILGGHTAQTTTFSAGNDQNRSMTSSTKTKVSSVTGVSSKLVSSSPSLKEIS
ASASSDYIIKFHSTVSPVVTPQKSFEHVRSEITNTYHPQPENFSEELSQATIYPMSTTHE
KLLVEESTSYHPGNYSVSQVDYGLASHVTALPKQISDANAGKQTSSQSSFYPDNDHHAPV
SGAGNQKLLQSVSQYNETSESNTSEVDISTLSKASTSESSQTVFKATATTISSIHGELTT
STTQSPNQVELGTSLATQPSSSSEEEEKHNRKTSTFPFLNERDPAIEEGTTPSVQIRLDV
GHTVVGETVDISGMYSCKENICLNGGSCFKSGSIYSCSCSPGYTGHQCETDIDECQSNPC
RNGGTCVDGLASFTCVCLPSYSGLYCEKDTEICDYGWHKFQGHCYKFFPQRKGWDSAERE
CRIQGAHLTSILSHEEQQFVNRLGQDYQWVGLNDKMFDNDFRWTDGSPVQYENWRPNQPD
SFFSSGEDCVVMIWHEGGQWNDVPCNYHLTFTCKKGTVACSQPPVVENARTFGRKRERYE
INTLVRYQCRNGFIQRHVPTIRCRGDGRWDTPKITCISPSSYQRSFMRRHQPHALYSINN
FKKWQDQTLRHHHQRNRGRRDRTIQKRTKQ
NT seq
8193 nt
NT seq
+upstream
nt +downstream
nt
atgattctaaatattaagcatatcctgtggttatattatctgtgtgatgctgcatatgca
acaacatccaacacattatcaataatccaaccaatctctggatccctctcagggaaagta
aatcttccctgcttcttctccacaatcccaacatcagcgccagtcataggtacaaataga
acagccaattatggcaaagattacttacgaatcaaatggaccaaaataaaaggacaggaa
aagtctacagtgttggtgatgcaaaatggggtcatcaagatgaaccccatctacaggaac
cgtgtgtcagtgcccagtcaccctgaggatgtcggtgacgcctccttgactatggtcaag
ctgcgagctagtgatgctgggacttacagttgtgaagccacatacggcattgaagatacg
catgatattgttaaccttgatgtcagtggtgttgtttttcactatcgagcaagccccagc
aggtacaccttaagttatgagaaagctgtccaaacttgcaaagatattggagcaagcata
gctacctattcccaactgaaagcagcttatgaagatggatttgaccagtgtgatgctggc
tggattgctgaccagacagtgagatacccaattaccagaccaagagacggctgccttgga
aaccttaagatgatacctggtgttaggacatacggagttagaaacccttcagagacctat
gatgtatactgttacgtcgataaacttgacggtgaagtcttttatgctcctgcggcgggt
aagctaacttttttagaggccactgaggagtgcaaaaaacacaaagctgtcttggcgtcc
actggccaactccacgctgcttggagaatgggactggacagatgtgactatggctggctc
tctgacgggagtgtacgacaccctgttgtgcatcctagaattccatgtggcggaggccta
atgggtgtcaggactctgtatcgctacagaaatcagacctgctttccagaaccttccatg
aagtttggagcttactgctttagaggagggagagacacaatcaaccagactttccttgtg
gatgtatctgtacaagaagtcattactaccaccaccaccaccaccagatccaccactgtt
tccaccacatcattcgacacaacagcagaggcagagaagtcttcagactatgatcccaca
tatgttacatcaatgttctctgtcagtatgtctcctcctcagcccactcccccagaccaa
gatgctcaattaatcacaacagttgcaccaacaattatagaggattctgatgataaagat
agtataagcgacatatacataaattactctaacagctttggtactgttggacctgttcct
tcccatggtgaagagatcactgaaattcacatgacgaaagagaccactggttctacagca
tcctttgaagatccagattcccactcggtgattgagatcagcacaatcaaacctgatgta
cttctaccagatgactctttaaatacagcaggcaggtttgcagaggggaagacagagaaa
actattgtgactcataggatgatcacagatatttcctctaaaatcacagatgctcctaca
gaatctactgaaatgaccaggaaaggagcatttatttcctctgaatcaacaccattcatc
gcagctcctggtttccagttaacaacaccaggagattatgaagatgggactataactgat
atttttctccaggctactccaccattccagccattcccacagatcatagatcaaactgcc
atggaaacatcaaccccaactacaagtggcactacctctaggtataacactgtgccagaa
gatgagataagcaccacagaaataacagagacccttgacattgaaaggcaaacaatacaa
aaaacacaggaagcagattctcttgctacatctggtgatccaaatgtagcttccaggttc
ccggttgacagccgagcgtttactgaagaagtggcattgtcaacaactgaacacaccctc
agtgagtccagcagtcggagaacagaacatactgcagaaactctcacagaggatgacact
ttgggaagcagtggggcagagagatttacattctcttctacgacatcagctgaaaccagc
acgctcaaaatcacaccttcagtggtcacggaggcacagattcagaatatttcagaaagt
agaacttctggtgaaaacatcactaagtctactgagacacccatcactaaaaccacgtct
ggctcttctgctttcaatattctgtccgtctcgacatcaagaaaagccgaaacaagtgac
acttcaaaaacagacgtttcttcagcttcagcgctccagagcacagaggaaccaacatca
atgtcatctgaaacatatcagactcttgctacactgaagttgcaggaaacgtcagcagtt
ccagtggaaagttcaaaatctccaattacaagagaagataggacaagtaaaccaacaagt
gaaatgtctagcagagacattgcatcttctactggctcatcattgttcagcactgagaag
acaacaaatcttctacctaaggatgacgacagtgttcaaacaggtcagacaacaacacct
tcactttccacagtaacgggcagaacagaaagttcttctgccgcttctccagtagataga
gactatactagaggccctaccattgacatgtacacaccagtctctactgttgcagggtta
tcgtcatctgacatcgtcaatgagacaacacaatcgcctgaagctatgacgattcaagta
agcacagaacccgaaacctctggagaaggctctgctgcttttgctgacaagtcagttgtg
accattgccatcgcattcccaacatctgctgtctctgatggtaaacccatgagcccatca
acgctttctccgattactccgtttgtctcatcgtccacaactttgcaagatcagtatgat
gaactgaatacaatgtttgtattggtggagtccattcctctaatcagtgaatcaagtatt
caacctgacacagcttcaaagctcattgtgacagatccagaaagtgctggacaaacacat
tctaatgttactgatgagtcagtgaagacaacagcagtttacacaacaataggcacaaag
tcagcttcagtctcagaatcatacacatctgaaacaagtgatgtgtcaaaaactgctgtt
acgccagccgtcttactccgcagcacagcaaaaccaacattggaatctactgaaacagaa
caaacttttaccacatcccattctcaagcaaaatctgaaacttcatttgacacgtcaagc
tcagccataactgatggaaggaccacaaatccgtatactagtggataccctgaagaaatg
tccagcaaacacatggcatctccaacaggttcctcgttaatcagtccagagaccacaaca
gcagaacaaattgatagcttttcaacagaacaaagaactctcccctcagtttcatccctt
accgaaaagccagagaaaagtgttggtgctactacagaagatatggacggttcaggaact
gtgagtacagacttgttcacatcatctataaccgttattggtggatcttccagtctctac
agtattgacacaacaacagtaacaacatctcctgaatcagagtctgcctctgtgagaaca
gaacaaggtacttctggtgaaaacatcactaagtctactgagacacccatcactaaaacc
acgtctggctcttctgctttcaatattctgtccgtctcgacatcaagaaaagccgaaaca
agtgacacttcaaaaacagatgtttcttcagcttcagcgctccagagcacagaggaacca
acatcaatgtcatctgaaacatatcagactcttgctacagtgaagttgcaggaaacgtca
gcagttccagaggaaagttcaaaatctccaattacaagagaagataggacaagtaaacca
acaagtgaaatgtctagcagagacattgcatcttctactggctcatcattgttcagcact
gagaagacaacaaatcttctacctaaggatgatgacagtgttcaaacaggtcagacaacg
gcaccttcactttccacagtaacgggcagaacagaaagttcttctgccgcttctccagta
gatagagactatactagaggccaaaccattgacatgtccacaccagtctctactgttgca
gggttatcgtcatctgacatcgtcaatgagacaacacaatcgcctgaagctatgacgatt
caagtaagcacagaacccgaaacctctggagaaggctctgctgcttttgctgacaagtca
gttgtgaccattgccatcgcattcccaacatctgctgtctctgatggtaaacccatgagc
ccatcaacgctttctccgattactccgtttgtctcatcgtccacaactttgcaagatcag
tatgatgaactgaatacaatgtttgtattggtggagtccattcctctaatcagtgaatca
agtattcaacctgacacagcttcaaagctcattgtgacagatccagaaagtgctggacaa
acacattctaatgttactgatgagtcagtgaagacaacagcagtttacacaacaataggc
acaaagtcagcttcagtctcagaatcatacacatctgaaacaagtgatgtgtcaaaaact
gctgttacgccagccgtcttactccgcagcacagcaaaaccaacattggaatctactgaa
acagaacaaacttttatcacatcccattctcaagcaaaatctgaaacttcatttgaaaca
tcaagttctgccattacagatagatggaacacaaatccatataccagtggataccctgga
gaaatgtccagcaaacacatggcatctccaacaggttcctcgttaatcagtccagaaacc
acaacagcagaacaaattgatagcttttcaacagaacaaagaactctcccctcagtttca
tcatttgaagtcactacaagattgtccactaatgaacctaacttttcttttaccagtgaa
gaggtgatatcaccagaatctgattatttcaataaggtggagtattcagccttcgaagga
tctgcagacatagatgacacaatgcttgaaatgcaaacagaagctcagcaaccctttgtc
gaaatatcttccctagcaatctctgcagcaagcttatcagatgcaaagcatgccgaactg
accacaaaatctcacaatgattattttgttgcaacagatgaggctgaaacagatgagact
gaaagtccatctttaacaagtctttctggtacacaacctgccaaaaaacttttctcctcc
actctagccccacacatgacaaacagagagactcattttgctgatccgagcattggaaat
ggttcttttgatgccaaccccagtgagtcaacatttcaagcagtgtctgatgccacgttt
ggagacatgtcagatgaaacagaaacccttgtttcaattaaaacaacatttagtgagcag
atttccaaaaaaggggttgaacatttctcaaatacagaaaaccccctcagttttgaacca
ataaaacatccagatacaagaacaaaaagtccagataaagatggagtggcaatagaagag
gaagcaacacaatcgtctcataaaacagagtatgttataaatgatcacacagttaatagt
tctagcagtgacactaatataaaatatatcctatcaaaatccacaccatctcctggtatt
agatatcatagtaacaaagaacaacaggttgtgattgttatgccaagtcacgacaaaact
gagactggacaaactaaacaaatgcctactatgatcttgcatccatctgaaccatcaagc
agtgcatccattctattcacagaggatacaaaagatgaagataaacttttttctggagtc
acatataatttgaggcaagaaagttccacctccaaagtcatcacaaaagataatatattc
tttaattttgatactatatctgcagtttcctcctctccattttacccaactatccggaca
gaggaagttggagttgattcagcaattacaataacacaagagatgaacttaagagaagaa
ccggaaggctcaggggctgtcaatgctcctttttttactccttcaccagtaactacagat
ccagtttcagtcactgacctctcaaggtcttttttgttatcatcaactcaagctactact
gagtcaacatattcaagttctaaagaaatccttggtggacatacagcccaaactactact
ttttctgctggaaatgatcaaaacagatcaatgacttcatcaacaaaaactaaagtatct
tcagtaactggagtttcaagtaaacttgtttcctctagcccttctctcaaagaaatttca
gcttcagcttcatctgactatataattaaattccactcaactgtttcacctgtagtaaca
cctcagaagtcatttgaacatgtgagatcagagatcacaaacacataccacccacaacca
gagaatttctctgaagaattatcacaagccacaatttaccctatgtccacaactcatgaa
aaacttctggttgaagaatcaaccagttatcatcctggtaattattctgtgagtcaggtt
gattatggtttggcaagtcatgtgacagctctcccaaaacaaatttctgatgcaaacgct
ggaaaacaaacatcctcacagagtagcttttaccctgacaatgatcatcatgccccagtc
agtggtgcaggaaaccaaaaacttcttcaatctgtttctcagtacaatgaaacctcagaa
tcaaacactagtgaagtggatatttccacactgtccaaagcatctaccagtgagtcttcc
cagactgtattcaaggcaactgctacaacaatatcaagtatccatggagaattaacaaca
tcaacaacacagtcaccaaaccaggtagaattaggtacatctttagccacacaaccttca
tcctcttctgaggaagaagaaaaacacaacaggaaaacgtcaacatttccattccttaat
gaaagagatccagcaatagaagaaggaacaaccccctccgtccaaataagactggatgtg
ggccacacagttgttggcgagacagtggacatttctggaatgtattcatgtaaggagaac
atttgtctgaatggaggatcttgcttcaagagtggcagcatctattcatgtagctgttct
ccgggttacactggtcatcagtgtgaaacggacattgatgagtgccagtcaaatccatgc
cgtaatggaggcacatgtgttgatgggctggcttcctttacatgtgtgtgtctcccaagc
tactctgggctttactgtgagaaagatactgaaatatgtgactatggttggcacaagttt
caaggccattgctacaaattcttcccccagaggaaaggttgggactctgcagagcgagag
tgccgcattcagggagctcatctcaccagcatcctttcccatgaagaacaacagtttgtc
aaccgtcttggacaggattaccagtgggttggcctgaatgataagatgtttgacaatgac
ttccgctggactgatggcagccctgtgcaatatgaaaactggaggcccaaccagcctgac
agcttcttttcatctggagaagactgtgtggtgatgatttggcatgagggtggccagtgg
aacgatgtcccttgcaactatcacctaaccttcacatgcaagaaaggcacagtggcctgc
agccagccccctgtggttgaaaatgcacgtacctttggtagaaagcgtgagaggtatgaa
atcaacacactggtgaggtaccagtgtcgaaatgggttcattcagagacatgttccaacc
atccgctgccgtggcgatggacggtgggacacacctaaaatcacctgtataagcccgtcg
agctatcagaggtccttcatgaggagacatcaaccccatgctctatacagtatcaataat
ttcaaaaaatggcaggatcagaccttgcgccaccaccatcagcgcaacaggggaaggaga
gacagaacaatacaaaagaggacaaagcaatga
DBGET
integrated database retrieval system
