Xiphophorus maculatus (southern platyfish): 102236311
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Entry
102236311 CDS
T02923
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
102236311
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
102236311
NCBI-ProteinID:
XP_023189510
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Position
5:complement(1955038..1974027)
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AA seq
1475 aa
AA seq
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MDKVTAVKVVSSGGGAAASSSSVVKKSVTTSGVTSQSDFSFSSGGSGGRVAAGGSEGTSS
SVLIKSSSSHRCGFGAGNERITTVGTSSAQSSGQRSGASGAAVASGRGERSKEAGGGSSS
MSYSFGSGSRETKKEGGLGAVTVSTVTKSSYASGGFREGKKGSASSGITYSPPPKERKSV
TTMAAALSDVFDESSDSSLEYSRKKYGSSTATTTSATRGRSQSRESEIRARLQSASPPAR
WTELDDVKRLLRGNRSTSTSPTQSPNNTLPIPKKASVEAKATSESSSGPIDQYGSVWSGD
VSSGYYSSNPNNYTATSHLYPSGAGVQNNLTLGSSSANAGQSVSGSVPVYGVQNNLTSPT
VFSPAGAGAQIVYGVQKNVSGTTAPTVRPSSPTIYEASGKDFNFVLIEKENAPIKKETEL
LIMDKDTGKHFVSTAPATLSGTYSEDSLKREKEKLLSSAVDKGTDAKSSTLKSTTKDKAT
YAAIHKDELGFGFCSCCSWWKWLLALVFTLLLLLGLLIGLIVLGVEVGHLKNRVHTLESA
TGIVSALTDNSIYLGPGGGIGARSGQRRAALQTTVQQLLRDELQSNDMRETLAYSLKGEK
GEPGPIGDPGALGQKGDSGFPGLPGPPGQIGHSGLDGPRGPKGNPGEPGPEGQSGQRGRE
GPMGPRGESGPPGVGEKGDKGSQGEPGHPGPAGAPGPLGPKGAAGEQGISGVPGVPGPKG
FQGEAGPSGAKGDRGAPGVPGIKGDNGERGPRGPVGESGTPGPQGPSGPKGSKGSGGESG
SIGLPGARGLPGLPGDVGPQGPPGIQGPPGVAGIPGQPGGKGEPGSPGKVIGPINSDTVA
IPGPPGPAGPPGSAGPPGLSGPIGPAGVPGQPGTKGERGDKGDKGDQGQRGEPGTGLPGP
PGLPGSQGEPGPLGPPGEGKQGPPGRRGPPGDPGVGTPGPRGEKGEPGSFLPTSETFFAG
PPGPPGPPGKEGAQGFQGEPGQPGLPGTPGFPGPPGPPGGPVIAGGEPGSSFIPGPPGPP
GPPGPPGSESPAVGQYIADYLQSDSIRQYLAGPPGPPGEPGSPGVSEDALVDNVASRVIS
YIQSSGPGAPGPPGPPGSVSVNDIISLLQRDEVRLYLMGPPGPPGPPGGPGIGGFSLNPQ
EVAERVYSLLNQRGALGAPGAPGPPGPPGPPGNLLATGFQSLIGPPGPPGAQGVPGPQGP
PGPPGPPGFGSYVSSDIRDYLQSVSLKGPPGPPGPPGPEGPPGPIGRMVSFTDHNRDLLK
PERQDYEFDGGDGLSRPMFGPPGPPGPPGPPGHKGESGLGSSTEWGPNSIDLSIMAERLT
DYIKAHGVLDGIVENYNSRIFQGPPGPPGPPGPAWFGSHGNATNIMEIIEAVKQQSRTGP
AIHGPRGPPGPPGPPGESRLFGSHTNVVDIMDYIKAHGVIVGPPGRPGPKGDQGLPGLTG
AKGERGYPGPQGYRGPKGDRGDFSLTTRRRRSSGV
NT seq
4428 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggtgacagcagtgaaggtggtgagctccggtggaggagctgcagccagcagc
agctcagtggtcaaaaagtcagtgacaacctctggagttacatcacagagtgatttttct
ttcagctccggtgggtcaggtggacgagttgcagcaggaggatcggaaggtacgagcagt
tcagttctgatcaaatctagcagctcccaccgctgtggatttggagccgggaacgaacgc
atcaccaccgtaggaacttcttctgcccagtcctcaggtcagaggtcaggggcctcaggg
gccgctgtggcctcagggagaggagagcggtctaaagaggccggaggagggtcctctagc
atgtcctacagttttggaagtggaagcagagaaactaaaaaagaagggggtcttggtgct
gtgaccgtttccacggtgaccaaaagcagctacgcatcaggagggttcagggaagggaag
aagggctcagcatcctctggcattacgtactcacctcctccaaaggagaggaagagtgtg
accaccatggcagctgctctgtcagacgtctttgacgaaagctcagactcttccctggag
tacagcaggaagaagtatgggagttcaactgcaactacaacttcagccactagagggaga
agtcaaagcagagagagtgagatcagagccaggcttcaaagtgcttcacctccagccaga
tggacggagctggatgacgtgaagcgtctgctgaggggaaaccgctccaccagcaccagc
cccacccagtcccccaacaacacactgcccattcccaagaaggccagtgtggaagccaag
gccacatctgagagctcctcaggtcccatcgatcagtacggcagcgtttggtcaggggat
gtgagcagtggatattacagctcaaaccccaacaactacaccgctacctcccatctttac
ccgtcaggtgcaggagtccagaacaacctgactctcggctcttcctctgcgaacgccgga
caatctgtcagcggctccgtgccagtatacggtgtgcagaataacctgaccagtccaacg
gtcttctcacccgctggtgccggcgcacagatagtttatggtgtgcagaaaaatgtctct
ggaacaactgcacccacagtgagacccagcagtcccaccatttatgaggcctcagggaaa
gacttcaactttgtgctgatagagaaggagaacgctcccatcaagaaggagacggagctg
ctcatcatggacaaagacaccgggaagcactttgtgtcgactgctcctgccactttgtca
ggcacttactctgaggactcgctgaagagggagaaagagaaacttttgtccagcgcagtg
gataaaggaactgatgccaaatcttcaaccttgaaatctaccacaaaagacaaagcaacc
tatgcagcgatccataaagacgagttgggttttgggttctgctcctgctgcagctggtgg
aagtggctgctggccctcgtcttcaccctgctgctcctcctggggctcctcatcggactc
atcgttttgggtgtggaggtgggacacctgaagaaccgtgttcatactctggaatccgcc
actggcattgtatcagccctaacagataattcaatctaccttgggcctggaggaggcata
ggagccagatcaggacagaggagagccgccctgcagacaaccgttcagcagctgctcaga
gacgaactacaatcaaatgatatgagagaaactcttgcttattctcttaaaggagagaag
ggagaaccaggacctataggtgatccaggggcacttggacaaaaaggcgatagtggcttt
cctggactgccaggtcctcctggacagattggacactcaggactggatggaccaagggga
ccaaaaggaaatccaggtgaaccaggtccagaaggacaatcagggcagaggggacgggag
ggaccaatgggtccccggggggagtctggaccccctggtgttggagagaaaggagataaa
ggttctcagggtgaaccaggacatcctggtcctgctggagctcctggaccccttggtcca
aaaggtgctgctggagagcagggtatctctggagtcccaggcgtacctggtccaaaggga
ttccaaggtgaagctggaccttctggagccaaaggtgaccgtggagccccaggtgttcca
ggaattaaaggggacaatggagaaagaggacctcgtggaccagtgggtgaatcaggaact
cctggacctcaaggcccatctggaccaaagggatctaaaggaagtggtggtgaatcgggt
tcaataggacttcctggtgctagaggtttaccgggtctccctggtgacgtcggtccccaa
ggacctcctggaatccaaggacccccaggtgttgcaggaattccaggccagcccggtggt
aaaggtgaaccaggatctcctggcaaagtcatcggcccgataaactctgacactgtggct
attcctggacctccaggaccagctggacctccaggttctgctgggcccccaggtttgtct
ggtcccattggtcctgctggagtcccaggccaaccaggtacaaagggagaacgaggggat
aagggagacaagggggaccaaggtcaacgtggagagccagggactggcctacctggaccc
ccagggctcccagggtcccaaggtgaacctggacctctggggcctcctggtgagggtaag
caggggcccccgggccgcagaggccctcctggagatccaggtgttggaactcctggacct
cgaggagagaaaggagagcctggcagcttcttgccaacatctgaaaccttctttgctgga
ccaccaggacctccaggtccacctggtaaagaaggagcacaaggattccaaggtgaacca
ggtcagccggggcttccagggactccagggttcccgggacctccaggacctccaggtggc
ccagtaatagcaggaggggaacctggaagctcattcattcccggaccacctggaccaccg
ggaccaccaggaccacctgggagtgaatcacctgctgttggccagtatattgctgactat
ctccaaagcgacagcatcagacagtacttggctggacctcctggacctcctggagaacca
ggctctcctggtgtttcagaagacgccctggtggataacgtagccagtcgagttatctcc
tacatccagagttccggcccgggggcgcctggcccacctggcccacctggatccgtctct
gtcaatgacatcataagtctactgcaacgagatgaagtgaggctgtaccttatgggtcca
ccaggcccaccaggacctcctggaggtccaggtatcggcgggttctcgcttaacccccag
gaggtggctgaacgcgtctacagcctcttgaatcagagaggggcgctgggtgcacctgga
gctccaggacctccggggcctccggggcctcctgggaacctgttggcaactggatttcag
tctcttatcggccctccaggaccccctggtgcacagggtgttcctgggccacaaggtccg
cctggcccccccggaccgccaggatttgggagctatgtcagctcggacatccgtgactac
ctgcagagtgtttccctcaaaggccctccaggccctccggggccccctggaccagagggc
cctcctggtccaatcggacgaatggtttcttttacagaccacaacagagacctgctgaag
cctgaaagacaagattatgagtttgatggtggtgatggtttgagtcgacccatgtttgga
cctcctggtccaccggggccccctggacctccgggacacaagggagagtcaggtttgggc
agtagcaccgagtggggcccgaactctattgacttatccatcatggctgaaagactgact
gattacatcaaagctcatggcgttctggacggcatcgttgagaactacaatagcaggatc
ttccagggtcctccagggccacctgggcctccaggccccgcctggtttggttcccatgga
aacgccacaaatattatggaaattatcgaagccgttaagcagcagagccgcactggacct
gccatccacgggccccggggaccacccggccccccgggtccaccaggagagagccgactg
tttggttctcacaccaacgttgttgatataatggactacatcaaagcccatggagtgatt
gtgggaccaccagggagaccaggaccgaaaggggaccaaggacttccaggactaacagga
gcaaaaggtgaacgaggttatcctgggcctcagggatacagaggaccaaagggtgacaga
ggagatttctcgctgacaacaagaagaaggagaagttctggtgtttga
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