Xiphophorus maculatus (southern platyfish): 102236335
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Entry
102236335 CDS
T02923
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03030
DNA replication
xma03420
Nucleotide excision repair
xma03430
Mismatch repair
xma03440
Homologous recombination
xma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102236335 (rpa1)
03420 Nucleotide excision repair
102236335 (rpa1)
03430 Mismatch repair
102236335 (rpa1)
03440 Homologous recombination
102236335 (rpa1)
03460 Fanconi anemia pathway
102236335 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xma03000
]
102236335 (rpa1)
03032 DNA replication proteins [BR:
xma03032
]
102236335 (rpa1)
03400 DNA repair and recombination proteins [BR:
xma03400
]
102236335 (rpa1)
Transcription factors [BR:
xma03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102236335 (rpa1)
DNA replication proteins [BR:
xma03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102236335 (rpa1)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102236335 (rpa1)
MMR (mismatch excision repair)
102236335 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
102236335 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Pox_vIL-18BP
CATSPERD-E_C
RADX
Motif
Other DBs
NCBI-GeneID:
102236335
NCBI-ProteinID:
XP_023207825
Ensembl:
ENSXMAG00000004102
UniProt:
A0A3B5R393
LinkDB
All DBs
Position
18:complement(27851084..27877428)
Genome browser
AA seq
600 aa
AA seq
DB search
MASLSTGAIEALANGSGWSEAVLQLLNIRKIDGGSGPSRFRVMMSDGRHTLSSFMLSTQL
NYMAEENLLVPNCVCVLKRQVTNVLKDGRRVVIILEIDVIKPADASDKIGDPIPYSDGQS
KGPQPAPVPESRPPLQPQNRNEGVDTNLKRNFAKKIPSALPDTPGGSSKIVPIASLNPYQ
SKWTIRGRVTNKSSVRTWSNARGEGKLFSMEIVDESGEIRVTCFNQEVDKFFSLIEVGKV
YYVSKGSLKIANKQYTSVKNDYEMTLNGESTVIPCEDSCDVPMMQCDFVSIGDLENREKD
AIVDVIGVCKSVDELTRLTTKANREVSKRALSLMDMSGKLVTVTLWGEEAEKFDGSGQPI
VAIKAAKLSDFGGRSLSASFSSTMMINPDIPEAYKLRGWFDKEGHAMEGQSLTEVRGAGR
SLLENWKSLADVKSEHLGHGDKADYYSCIATIVFLRKENCLYQACPSQDCNKKVVDQQNG
MFRCEKCDKEFPNFKYRLILSANIADHADNQWVTCFQDSAEAILGQNAAYLGQLKDSNES
AFDEIFQQANFNTFIFRNRVKLETYNDESRIKATVMEVKPVDHRDYSKRLIMNIRSMGAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtctttcaacgggcgcgatagaggctttagcaaatggcagcggttggagcgaa
gcagtgcttcagttgctgaacattcgcaagatcgacggcgggagtgggccctctcgcttc
agggtgatgatgagcgatggacgacacacactgtcatccttcatgctctccactcagcta
aactacatggccgaggaaaaccttctggtcccaaactgcgtgtgcgtcctgaagcggcag
gtcacaaatgtgctcaaagatggacgacgagtggtaatcattttagaaattgacgtcatc
aaacctgctgacgcctctgataaaataggagacccaattccttactctgatggccagagc
aaaggcccgcagccagctccagtccctgagagcagaccgcctctgcagccacaaaacaga
aatgaaggtgtagacacaaatttgaagagaaactttgcaaagaagattccttctgctttg
cctgatactccaggaggaagctccaaaattgtccccatcgccagcctcaacccctaccag
tccaagtggacaatccggggtcgtgtgaccaacaagagctccgttcgtacgtggagcaac
gctcgaggcgaaggaaaactcttctctatggagatcgtagatgaaagtggggagatccgt
gtgacctgcttcaaccaagaagtcgacaagttcttctctctcatcgaggtcggcaaggtc
tactacgtctccaagggctctctgaagatcgcaaacaagcagtacacgtcggtgaagaac
gactacgaaatgactctcaacggagagtccaccgtcattccctgtgaggacagctgcgac
gttcccatgatgcagtgcgactttgtctccatcggcgacttggagaacagagagaaagac
gctatcgttgatgtaattggagtgtgcaagagcgtggatgagctgacccgcctgacgacc
aaggccaaccgcgaagtgtccaagagggcgctgagtttgatggacatgtccgggaagttg
gtgaccgtcaccctgtggggagaggaagcggagaagttcgacggctccggacagccgatc
gtagccataaaggccgccaagctctcggacttcggaggccgctcgctttccgcgtccttc
agcagcaccatgatgatcaacccagacatcccagaggcatacaagctcagaggctggttt
gacaaggaaggacacgccatggagggtcagtccctgacggaagtgagaggtgccggcaga
agtctcttggagaactggaagtccttggctgacgtgaagtcggagcatctgggacacggt
gacaaggcggactactactcctgcatagccaccatcgtgtttctgcgtaaggagaactgc
ctttatcaggcctgcccaagccaggactgcaacaaaaaagtggtggaccagcagaatggc
atgttccgctgcgagaagtgcgataaagagtttcccaacttcaagtaccgcctcattctg
tccgccaacattgcggaccacgccgacaaccagtgggtgacttgcttccaggacagcgct
gaggccatcctgggccagaacgccgcgtacttgggccagctgaaggactcgaacgaatcg
gcgttcgacgagatcttccagcaagcgaacttcaatacttttatctttcgcaacagagtg
aagctggaaacgtataacgacgagtcgaggattaaagcgacagtgatggaggtgaagcct
gtcgaccacagagactacagcaagaggttgatcatgaacatacggagtatgggagccaag
tag
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integrated database retrieval system
