Xiphophorus maculatus (southern platyfish): 102236417
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Entry
102236417 CDS
T02923
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K08135
collagen type XV alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
xma00535
]
102236417
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102236417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
102236417
NCBI-ProteinID:
XP_023191708
Ensembl:
ENSXMAG00000011334
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All DBs
Position
6:complement(6612513..6696489)
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AA seq
1361 aa
AA seq
DB search
MGAVRLCLALVFLASPVCAQWWNFFWAKPKTTTLLPPLSSPTSSHQKPSTTQGTPSEWGE
GKKEDTVTANHVEDTGTGWTTPSSAPHTSGDLASRNNKKTLTSSSRENSGGVAKGRSENK
PLKQWKSEKASGSHLDLMDLIGIPLPPAVSFTNGFQGFPAYSFGSDANVGRLTRTFVPGP
FYRDFAIIVTVRPTAQRGGVLFAITDAHQKVVELGLALTPVHGGLQRIVLYYTDTEQASH
SHKAAAFSVPDMTDQWTRFTLVVEHNEVRLYMDCGEAERTTFRRRPEKLTFSPNSGIFVA
NAGSTGLDKFEGSVQQLIIRDDPRAAEEQCEEDDPYASGYASGDDPLDDRETEVDSRKRE
DGVKRPVVSLKGESNFPVEAPPTVLPEVELDEYSGHMTPTAANEDLLITESHQTEEAGER
PGHVLIRPGLKGEPGDRGPPGPPGPPGSPGPRYVHKEGRGKLGPQGPPGAPGTPGGDGQK
GGKGEKGEVGQKGQQGSPGLSGEAGAKGDKGDPGVGLPGPPGLPGPPGPPRSRSVPYGPD
ALGSGFEDLDTDTVFIRGPAGPPGPPGPPGPPAPQLSSELTPSHPGPPGSPGGDGLPGEQ
GIPGPAGTDGSPGPPGGAGPKGDQGTPGPPGPKGESGDAGPPGSPGLQGPNGRSGRKGPA
GPPGPPGPPGPPGTKVLVEDMEGSGKSDLLIRTGVRGLQGPPGVPGPPGPPGEDGAPGVP
GLSVKGEPGKRGPDGLQGFAGLPGPRGSKGEKGSPGSKGEPGADGLSITGPPGPPGPPGP
VANLQELLQNATDGMLNFTEFSGPPGPRGPEGLPGQAGFPGPRGPKGDRGPQGVEGATGE
KGEKGEPGVTIAADGSILSGPRGPQGPKGPKGDRGFPGAIGPVGPMGHPGQKGEYGFPGR
PGRPGMVGRKGDRGESVSLPGPPGPPGPPGPPGRILGLNGESVTKRDSVGLKGAKGDEGT
PGEPGTPAPPLPDAAEGAKGDLGVKGEKGEKGDAGQPGPPGLPGKSGLVGPKGESVVGPP
GPAGTPGQPGAPGLGQPGPRGPPGPAGPPGPAPEYGSDVSVPGPPGPPGPPGSPGYANPV
TTFKTVKALSRETRDQRAAEGTLAYVSERGGELYIRARNGWRKIQLGELIQNGASSSEAS
QALSRAGDWSRPQRVHSQELQEGSRGFQPSYNILPQTIESVPGLHLVALNAPLKGDVRGI
RGADFLCYQQARSVGLTATYRAFLSSHLQDLATIVRKADRNNLPVVNLRGEILFSTWTSI
FSENAGVFNPLTPIYSFDGRNIMTEPAWPEKLVWHGSSKVGTRLTANYCEAWRTGDVAVT
GQAALLQTGRLLGQHPRSCSNHYAVLCIENTYVGNTPQRRT
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgggagctgttcgcctctgtcttgcgctggttttcctggcctctccggtgtgcgcgcag
tggtggaactttttctgggcgaagccaaaaaccaccactcttcttcctcccctttcctct
ccgaccagctcccaccagaagccttccaccacccaggggactccgtcggagtggggagag
gggaaaaaggaggacacggtgacagcgaaccatgtggaggacaccgggacagggtggacg
acgccgtcctctgctccacacacctcaggggatttagcttcccgcaacaataagaaaacg
ttgacatcgtcttctagggagaactcaggtggagtcgccaaaggcaggtccgagaataaa
ccactgaaacaatggaagagtgagaaagcttcaggaagtcatctggacctgatggatctg
attggcatccctctgcctcccgctgtctccttcaccaatggtttccaggggtttccagcg
tacagcttcggaagcgacgccaacgtcggccgactcacaaggacatttgtgcccgggcct
ttctacagggactttgccattattgtcacggtgcgtccgaccgcccagagaggaggcgtc
ctgtttgccatcacagacgcccatcagaaggtagtggagctgggtttggccctcacgccg
gtccacggaggcctccagcgaatcgttctgtactacactgacacggagcaggcgtcccac
agccacaaagctgctgccttcagcgtcccagacatgacggaccagtggacacggttcacg
ttggtggtggagcataatgaggtgcgtctttatatggactgcggtgaggctgagaggacg
actttccgtcgcaggccagagaaactcaccttttcaccaaactctggcatttttgtcgca
aacgccggaagcacaggcctcgataagtttgaggggtctgttcagcagctgatcataagg
gatgatcccagagcagcagaggagcagtgtgaggaggatgatccgtatgcctcggggtat
gcgagcggagacgatcctctggatgacagagagacagaggtggactccagaaaaagggaa
gatggcgtcaaacggccagtcgtctctctgaagggtgagagcaacttccctgtcgaagct
ccgcccactgttttaccagaggtggagcttgatgagtattctggtcacatgactccaaca
gcagccaatgaggacctgctgataacagagtctcatcaaacagaagaggcaggagagcga
cctggacatgttctcatcaggcctggcttgaaaggggaaccaggagatcgtggaccaccg
gggccaccggggcctcctggctctccaggacctcgctacgtacacaaagagggccgtggg
aaacttgggccacaaggacctcctggagccccgggaacaccagggggcgatggacaaaag
ggaggcaaaggtgaaaaaggtgaagtgggtcaaaaaggacaacagggatctccaggtttg
agcggagaggctggagctaaaggagacaagggagacccaggcgttggtttgccaggcccc
cctggtcttccaggacccccaggacctcccagatcccgcagtgtcccatatggaccagat
gcccttggttctggctttgaggatctggacaccgatactgttttcatcaggggtccagca
ggtcctccggggcctccgggaccacctgggcctcctgcaccccaactgtcatcagaactg
acccctagccatcctggacccccgggttcacctggtggtgatggacttccaggcgaacag
ggaataccaggtcccgcagggacagatggctccccgggcccaccagggggtgctggacca
aagggcgaccaagggacacctggaccacctggaccaaagggtgaaagtggagatgcgggc
ccaccaggatctcctggactccaagggcccaatggtcgatcaggaagaaagggacctgca
ggtccaccaggaccccctggcccacctggccctccaggaaccaaagtccttgtagaggat
atggagggatcgggaaagagcgacttgttaattaggacaggagtaagaggactgcagggc
cctcctggcgtaccaggaccccccggaccaccgggtgaggacggcgctcccggtgttcct
gggctttctgtcaagggggaaccagggaaacgaggaccagacggccttcagggctttgca
ggactgccaggtcctagagggtccaaaggagaaaaaggcagcccaggatcaaagggcgag
ccaggtgctgacgggctcagtatcacaggaccgcccgggcctcccggacctccaggacct
gttgcaaacctacaggaactgctccagaacgctacagatgggatgttaaacttcacagag
ttcagtggacccccggggcccaggggccctgaaggtttgccgggacaggctggatttcca
ggtcctagaggaccaaagggagacagaggacctcaaggtgttgagggagctacaggagag
aagggagaaaagggcgaacctggcgtgacaattgctgcagatggatctattttgtctgga
ccgaggggccctcaggggccaaagggcccaaagggcgaccggggcttcccaggagccata
ggacctgtgggaccgatgggacatcctggtcaaaaaggagagtatggtttccctggacgc
ccagggcgaccaggtatggtggggagaaaaggcgaccgaggagaatctgtcagcctgccg
ggtcctcctggtcctccgggtcctcctggtccaccaggaagaattctcggtctaaatgga
gagtcggtgacgaagagagactctgtgggacttaaaggagccaaaggcgacgaagggacg
cctggtgagccgggaacgcccgcacccccgttacctgacgcggcagagggagctaaaggc
gatctgggggtcaaaggtgaaaagggagaaaagggcgacgcgggccagcccggtcctcca
ggacttccagggaaatccggacttgtgggtccaaagggggagtccgttgtaggtccccca
ggtccggctggtactcctggtcaacccggagctcccgggctcggacaacctgggccccga
ggcccgcctggccctgctgggccgccgggaccggcccccgaatatggatctgacgtcagt
gtccctggtcctcccggtcctcctggtccaccaggatctccaggctacgctaacccggtg
acgaccttcaagaccgtcaaggctctcagcagagagaccagagaccagagagccgccgag
ggaacgctggcgtacgtgtccgagagagggggggagctgtacatcagggcacgcaacggg
tggcgcaaaatccagctcggagagctgattcaaaatggagcctcctcatcagaagcgtct
caggctctgagcagagcgggagattggagccgaccacaaagagttcacagccaggaactg
caggagggcagcaggggattccagcccagctacaatatcttgccacagaccattgagtcc
gtacctggactccatctagtggcgctgaatgcgccgctcaaaggcgacgtgcgcggcatc
cgcggggcagacttcctgtgctaccagcaggcgcgctccgtggggcttaccgccacctac
agggccttcctgtcatcacacctccaggacttggcgaccatcgtacggaaggctgaccgc
aacaacctgccggtggttaatctgaggggggaaatattgttcagcacttggacctccata
ttctctgagaatgcgggcgtgttcaacccgttgacacccatttattctttcgatggacgc
aacataatgactgagccagcatggccggagaagctggtgtggcacggctccagcaaggtg
ggcacccgcctgaccgccaactactgcgaggcgtggcggacgggcgacgtggcggtgacg
ggccaggcggcgctgctgcagacgggtcgtctgctgggacaacacccccgctcctgctcc
aaccactacgcagtgctgtgtatagagaacacatacgtgggaaacacaccccaacggaga
acctga
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