Xiphophorus maculatus (southern platyfish): 102236733
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Entry
102236733 CDS
T02923
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102236733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xma03041
]
102236733
03009 Ribosome biogenesis [BR:
xma03009
]
102236733
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102236733
Spliceosome [BR:
xma03041
]
Complex A
U1 snRNP components
U1 related factors
102236733
Complex B
102236733
Ribosome biogenesis [BR:
xma03009
]
Eukaryotic type
Pre-60S particles
Helicases
102236733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
102236733
NCBI-ProteinID:
XP_005797543
Ensembl:
ENSXMAG00000006131
UniProt:
M3ZVC8
LinkDB
All DBs
Position
5:complement(8357575..8369555)
Genome browser
AA seq
636 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGGGGNRGGPPPGKFGNPGERLRKRHWNLDELPKFQK
NFYQEHPDVTHRPLQEVEEYRRSKEVTVKGRDCPKPIVKFHEAAFPSYVMDVIVKQNFTD
PTPIQSQGWPVALSGKDMVGIAQTGSGKTIAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIHGDKSQQERDWVLNEFRFGKAPILIATDVASRGLDVEDVKFVINY
DYPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAE
DRGGRGRGGRGGYRDDRRDRYSGGRSNFGGGGGYRDRDGDRGFGNGPKTAFGGNKAQNGG
NYGGNNSNSSGNYGNSNYSNSNGQGNFSAAPNQGGAGGFGNQNFQGPPQFGGMQRPAQNG
VNHPPFPFNSQPPPQNQQPPPPPPMVPYPMPPPFPQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgcctggcttttcagacagagaccggggcagagatagaggttatggtggcggccctcct
cgttttggtggcggtggaggaggcaacaggggaggccctcctccaggaaagtttggaaac
cccggagaaaggctgaggaagagacactggaacctggatgagcttccaaagtttcagaag
aacttctaccaggaacacccggacgtcacacacagacctctgcaagaggttgaagagtat
cggagaagcaaagaagtcacagtgaaaggcagagattgtcccaaaccgatcgttaaattc
catgaagctgcttttccaagctatgtcatggatgttattgttaagcagaacttcactgac
ccgactccaatccagtcccaggggtggccagtcgctctgagcggcaaagacatggtgggc
atcgctcaaactggctctgggaaaaccattgcttatcttctgccggcaattgttcacatc
caacatcagccgttcttggagcacggagacggacccatttgcttggttctggccccgacc
cgggagctggctcagcaggtgcaacaagtggctgctgaatatgggagggcttctcgtctc
aagagtacctgcatctatggtggcgcgccaaaagggccacaaataagggacctggagagg
ggagtggagatttgcatcgctactccaggccgtctcattgatttcctggagtgtggtaaa
accaatctgcgtcgttgcacctaccttgtgctggatgaagccgaccgcatgctggacatg
ggctttgaacctcagatccgcaaaatagtggaacaaattcggcctgatcgtcagactctg
atgtggagcgccacctggccgaaagaggttcgtcagctggctgaggacttcctgaaggac
tatgtccagatcaatattggtgcattgcagctcagtgccaatcataacatcctgcagata
gttgatgtctgcaatgacctggagaaggaggacaagctgatccgtttgttggaggagatc
atgagcgaaaaggagaacaagaccattatctttgtggagaccaagcgacgttgtgatgaa
cttaccagaagaatgagaagagatgggtggccagcaatgggtatccatggagacaagagc
cagcaagaaagggactgggttcttaatgagttcagatttggcaaagccccaattctgatt
gctacagacgtggcttcccgtggtttagatgtggaggatgtgaaatttgtcatcaattat
gactaccctaactcctccgaggactatatccaccgcattggccgcacggcccgcagtcaa
aaaacgggcacagcctacaccttcttcacccccaacaacatgaaacaggccagcgacctg
atctctgtgctgcgcgaggctaaccaggccatcaatcccaagctcatccagatggcagag
gacagaggaggtcgcggacgggggggaagaggtggctatagggatgaccgtcgcgatagg
tattcaggcggcagaagtaacttcggtggcggcggcggctacagggacagggacggcgat
agagggttcggcaacggcccgaaaactgcctttgggggaaacaaagcccaaaacggtggg
aattatggaggcaacaatagcaattctagcggtaactatggcaacagcaattacagcaat
agtaacggacagggtaactttagcgctgcaccaaaccaaggcggcgctggcggctttggt
aaccagaacttccagggcccccctcagtttggcggtatgcagaggcccgcccagaacggc
gtgaaccacccgccgttccccttcaactctcagccaccgccacagaaccaacagccaccg
ccgccgccaccgatggtgccctacccgatgccgccgccattccctcagtaa
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