Xiphophorus maculatus (southern platyfish): 102236734
Help
Entry
102236734 CDS
T02923
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xma04147
]
102236734 (col18a1)
00535 Proteoglycans [BR:
xma00535
]
102236734 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
xma00536
]
102236734 (col18a1)
Exosome [BR:
xma04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102236734 (col18a1)
Proteoglycans [BR:
xma00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102236734 (col18a1)
Glycosaminoglycan binding proteins [BR:
xma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102236734 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
102236734
NCBI-ProteinID:
XP_023193375
Ensembl:
ENSXMAG00000007154
LinkDB
All DBs
Position
7:29710408..29788923
Genome browser
AA seq
1367 aa
AA seq
DB search
MRSWFKVLPLLTLWVVYSEAWFWSWSETGTTLAPGLELEGSGIATGSGEPLSESSTTAGA
EIIDEGHVLQTVGQTWDETTEGPRMTTVVPSTPPERGRGVGQTTAGTTSRRSKPEDSGVS
LLQLIGDPPPEKILEVDGPDNSPAYLFGPESATGQLARAHFPNPFYRNFALIFSLKPTSD
DGGIVFSITDSSQQIMHLGVKLSAVQGSEQNVVLFYSQVGARQSKEAARFRVPSMTNAWN
RFAVAVKDDKAMLYLNCDMEPQATRMERSAGELKLESGSGVFVGQAGGEHPDKFKGAISE
LRVVGDPSAAARFCEEDDDSDMASGEGSGYRETRRPKPFSEKPQQTTADESLPPIQQPPL
ERTGQRAQAGAAAAKGEKGDRGEKGDQGPSGPKGDTGSGSLGGNRGLKGEPGEKGAKGSA
GFGYPGSKGEPGLPGPPGPPGSPGPANEYSVDQDGSVVSKVPGPRGPPGPAGPQGPPGED
GEPGDPGEDGKTGPQGPPGFPGTPGDAGVKGEKGDRGAGQPGLRGPPGPPGPPGTGYRST
FEDMEASGFPDLVSVRGLPGPPGPPGPPGPPGLSSTSTSVNSGAVGPPGKDGAPGQPGLP
GLPGADGLPGAPGPRGEKGDSGDLGLPGAIGQKGSLGEPGLPGPTGEPGLAGLPGPRGPV
GPPGPPGPPGPGHRVGFDDMEDSSGIYTNGLPGVRGPEGIQGPPGLPGHPGKPGFPGSQG
PKGEQGLAGRDGLPGLDGFPGPPGQKGDRGDKGETGDPGRDGTGLPGPPGPPGSPGQIIY
QPSDNGVAGLPGRAGFPGPVGPKGDRGDPGSPGYGLKGEKGEPGLIIGPDGNPLYLGGLT
GTKGDRGLPGIIGPSGPQGPPGLKGEIGMPGRPGRPGVNGYKGEKGEPAGGAGYGYPGVA
GPPGPPGPPGPPGPAIALDRFNRFDENSRGYQVVKGEKGERGSPGIPGTASNFDIYTFKN
ELKGDQGDLGVKGEKGEPGGGYYDPRFGGPVGPPGPPGNPGLPGPKGESIAGPPGPSGPS
GPPGVGYDGRPGPAGPPGPPGPPGNPSFSGTYRPNYPVSVPGPPGPPGPPGSPGLSSGVT
VLRSYDILIATARQQPEGSLIYILDKADLYLRVRDGLRQVLLGDYRTFFGDLGNEVAEVQ
PPPVVVYPQTPERTSNNGAGHYSQSSVVIRPVEPPLRQPSPPVAPAADSSESGLHLVALN
APQTGNMRGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYTIVRRSDRNGVPIMNLKN
QVLFSSWESIFSEDSNKMRENVSLYSFDGRDILRDSAWPEKMVWHGSSKKGHRQMDHYCE
TWRAGEHAVTGLASSLQSGRLLQQMPSSCSGSYIVLCIENAFTSPSK
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctggtttaaggttttgccccttctgaccctgtgggtggtctactctgaggct
tggttctggtcctggagtgagaccggcacaacgttggcgcccgggttagaactggagggt
tctggcattgcgacaggtagcggagagcctctatctgagagcagcaccacagctggagca
gagatcattgatgaaggacacgtgctccaaacagttgggcagacttgggatgagaccact
gaaggtcctcgaatgacgactgtagttccttcaacgccaccagagagggggcgtggagtg
ggacaaaccaccgcagggacaacatcacgcaggagtaaacccgaagacagcggtgtgtcg
ctgctgcagctgatcggcgatcctcctccagagaagatcctggaggtggatggcccggac
aacagccccgcctacctgttcgggccagagtccgccacgggccagctggcccgggcccac
ttccccaaccccttctacaggaactttgccctcatcttcagcctgaagcccacctccgat
gacggcggcatcgtcttctccatcaccgactcttcgcagcagatcatgcaccttggcgtc
aagctgtcggccgttcagggatcggagcaaaacgtcgttttgttctacagccaggtcggc
gcccggcagtccaaagaggcggccaggttccgcgtgccgtccatgacgaacgcctggaac
cgcttcgctgtggctgtgaaggacgacaaggccatgctgtacctgaactgtgacatggag
ccccaggcgacgcggatggagcgatcggcgggggagctgaagctggagtcggggtctggg
gtgttcgtgggccaggctggaggggagcatcctgacaaatttaagggcgccatcagcgag
ctgcgggtggtgggagaccccagcgccgcagcgcggttctgcgaggaggacgacgactcc
gatatggcttcaggagaaggaagtggctacagagaaaccagacggccaaaaccgttcagt
gagaaacctcaacagacgacagccgatgagtctcttcctccaatccaacagccgccgctg
gagcggaccgggcagagggcacaagcaggtgcagccgctgctaaaggagaaaaaggcgac
agaggagagaaaggagatcaaggcccgtcgggcccgaagggagacacaggctccggctcc
ctagggggaaaccgcggactaaagggagaaccaggtgaaaaaggagcaaagggcagtgca
ggttttggatatccgggttcaaagggtgaaccaggccttcccggaccaccagggccccct
ggatctccaggacccgcaaacgagtattcagttgaccaagatgggtcggttgtttcgaag
gttcctgggccgcgcggaccgcctggaccggcagggcctcaggggccaccaggagaagat
ggagaaccaggtgaccccggtgaagatggaaaaactgggcctcagggacctccagggttt
ccaggaactccgggtgacgcaggagttaaaggagagaagggcgaccgtggagcgggccag
cccggcctcagaggacccccagggcctccaggaccaccgggtacaggatacagatctaca
ttcgaggacatggaggcctctggattccctgatttggtctccgttcggggacttccaggt
cccccaggtcctcccggtcccccaggtcctcctgggctttcctcaacaagcacgtctgtg
aactctggagctgttggacctccaggaaaagatggagcacctggccaacctggtctgcct
ggtttacctggtgctgatggtcttccaggagctcctggtcccaggggagaaaagggggat
tcaggtgatcttggactcccaggagcaattggacaaaagggatctctaggagaacctggt
ttaccgggacctacaggagagcctggactggctggtctgccaggacccaggggaccagtt
ggtcctcctggacctcctgggcctccaggaccaggtcatcgggttggatttgatgacatg
gaggactccagtgggatttacactaatggacttcctggtgtcagaggaccagaagggata
cagggacctcctggtttacctggacacccaggtaaacccggtttcccaggtagtcaaggt
ccaaagggtgagcagggtctggcaggaagagacggactaccaggcctggatggcttccca
ggaccgccgggacaaaagggtgacagaggtgacaaaggcgagacgggtgatcccggtcga
gatggaaccggactcccaggcccacctggtccacctggatcaccgggacaaataatctac
cagccatctgacaacggagtggctggtttacctgggagagctggatttcctggtcccgtt
ggaccgaagggggacagaggtgaccctggttcaccaggttatggcctgaagggtgaaaaa
ggggagccaggcttgataattggaccagatggaaatcctttgtatctgggaggcctaaca
ggcaccaagggagacagaggactgccaggaattattggaccttctgggcctcaggggcct
ccgggactgaaaggtgaaataggaatgccaggaagacccggtcgtccaggtgtgaatgga
tacaagggtgaaaaaggagagccagcagggggtgcaggttatggctacccgggagttgcc
ggcccaccgggacctccaggacctcccggaccaccaggtccagccattgctctagatcgc
tttaatcgctttgatgaaaactcaaggggttaccaagtggtaaagggagaaaaaggagag
cgtggatctcctgggatcccaggaactgcgtcaaactttgatatctacacatttaagaat
gagctgaagggagaccagggagatctaggagtgaagggggagaaaggagagccaggtggt
ggatactacgacccacgttttggaggaccagtgggcccaccaggacctccaggaaaccca
ggattaccagggccaaagggagagtctatagctgggcctcctgggccatcaggaccttct
ggaccaccaggtgttggctatgatggccgtccaggaccagcaggaccacctggacctcca
ggacctcctgggaatccctcattttctggaacatacagacctaattatcctgtcagcgtt
cctggacctcctggtccgccaggcccacctggaagccctggcctctcctctggggtgacg
gtgttgaggtcatatgacatcctgattgcgacggccaggcagcagccggagggaagtctc
atttacatcctggacaaagcagacctctacctgagagtgcgcgatggacttcgacaagtc
ctcctcggagattacaggaccttctttggagatctgggcaacgaggtggcagaagtgcag
cccccaccagtggtcgtgtacccccagaccccagaacggacttccaacaacggagcgggc
cattactcccagagcagcgtggttatccgacccgttgaacccccactgcggcagcccagc
ccccccgtggcgccagctgctgactcgtcagaatcaggacttcacctcgtagcgctgaac
gcgccccagaccggcaacatgcgagggattcgcggggcggacttcctgtgcttccagcag
gctcgcgctgttggtctgaagggaacgttcagagccttcctgtcctccaagcttcaagac
ctctacaccatcgtccgcaggtcggacaggaacggagtccccatcatgaacctgaagaac
caagtgctgttcagcagctgggagtccatcttcagtgaggacagcaacaaaatgagagag
aatgtatcgttgtactcgtttgacggcagagacatcctcagggacagcgcatggccagag
aagatggtctggcacggatcgagcaaaaagggccaccggcaaatggatcattactgtgaa
acgtggcgagcgggcgagcacgctgtgacgggcctggcgtcgtccctgcagagcggccgc
ctcctgcagcagatgcccagcagctgctccggctcctacatcgtcctctgcatcgagaac
gccttcacgtcgccctccaaataa
DBGET
integrated database retrieval system
