Xiphophorus maculatus (southern platyfish): 102236915
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Entry
102236915 CDS
T02923
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102236915
03036 Chromosome and associated proteins [BR:
xma03036
]
102236915
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102236915
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102236915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
102236915
NCBI-ProteinID:
XP_023204457
LinkDB
All DBs
Position
16:19506273..19530140
Genome browser
AA seq
2001 aa
AA seq
DB search
MEDKKKKKDEKKKRETSQKVPEQKIKVPEPAKPSCSQPLATPGSASPSPGPVSPSSPSPG
AGGGSAQVPPGGGNNAKQRTAVANGQPSSSALSPSGSQSSQQQQRYMSREVPPRFRCQQD
HKVLLKRGQPPLSSMLLGGGESSTGEVGGGSCWDVAPSLQGAEGPNANADGNTDSNVGSS
SPSPPTSSSFCVAALSSSTTTSTYANSTWGASSSGQSSSQGCRKVFMDGTDLDDWPSITA
GPKLSSEGAGGGMQEQDCPGNNNSSASWGERNMQQKGGTAGGGGGGEGNMDNISPPRSSP
LSSSSSPIECAQPSSVWVSSPASQVEVGQGSAASYNSKVSHLLPGPQESPLGGSSSVPGA
NFNPNVNPSAWPALGQSGTSVPACSASSQHSSVTSASSFSASTTVITTQTLSSVNQTGLY
QQHTETAVGAKTGEQQQQHLGNPGPEPCSGGTGREAGPNQEGVNEGNSEVGGEGEANTSG
SLSSSSAASSSWSAMPPVTSEPGAGASQADGWGGGGTGAQGHEGNVWRFGSQDDKAGWSK
GNGGGSTNPVVSQGAWEGGSTEVNWGGTAESVGSINLAIGSGGEVDGSSISSSTDSGGGC
LEDSASQNLATMTKAWDNQKGMESGDGTVEEWGGAGGQGGAVGGGGGNSSSSGGGSVAGN
GGGQKERSARHHSDHSSEADVALLSMLNRSDLDPRVLSNTGWGQTQIKQNVAWDLDTSKG
VGNRNERNPSSSSAFSSATINTTTIRSSRYPSESGSASNDASSGSLNSGPATPRDNWEGG
TKQSTSGPFMPSSTMRKPGSPEDDMQGSQGKAAGGWGEPPPEKEGKGWRTDDQQWGGHRG
GRKNWQDYEQQGSGWGDGAEDKGTGGWKGSTRGETGGWGEEWGKKDSASGAGWGDGRRRV
GSNSDEGSSWGNMDEGGSQRRGWGSGGDVGGGKSHQDWGGAKPNAAQIPNSQAAPMKAQN
HHHHQQQQQQQSPEGFNSQPNVGGGAQLSKNQNQSLGWTAGPIPQISGGAGDPLEPSGWE
EPSPQSISRKMEIDDGTSAWGDPTRYNNKNVNLWDKNSTAPGSKQGPQCPPPAMQQQPPR
RQHSINSNPGSGAVGMWGGAAQSVDDGTTTWSQASDAATSWREPDDSSKSSGWRNPSPNP
SKPGVKSVDSWGGKGDGSIAASRHPSWEDDEDGGGGGGGGVWSSAGSQGSGSSFNSGGWS
QSHAGKRGNIKSGGGDSWMNPVSRQFSNMGLLGDDPGVEKKMDGDKRGINDYNGEMRRGG
RSGGGGYRMPSSKDMGPGDMGPYGDKMGGHGVFAAGGGGMSQPRGMHQPGMHSMNSSPGL
RAQVPHQFLSAQVPGPMLKQMPSPGGSVGGVGGVGGVGSVGGVGGGVFPPQISPQQLAVL
SNIYPHMQQFHLACQLLLQQQQQQQQQVLQNQRKFPQPQPLRQQTDPQQLARIMAILQQR
QQQVGAGGATAGGGNSKLSPSHLGGGVSKQSMVDPLPHTGMGGPLSDLHAKSQGMYSGLT
AGGNLSTLELSPMMGGMKDMSGQQSRFKWMMEGHSPAPSPPDTALHKNGPVPSTIKVRGG
SPYSQYEMLGSEGLGIPPQGSADSWHRTPGSKMGNKPATSSWPPEFQPGVPWKGIQSTGD
PESDPYMTPGRVLGSPASPNLNDPDHPLLRDNIGPNPSLNTSLPSPGAWPYSASDSPLSN
AHSTGKYAEYKPSWPPEPIGQNKLWKTNRSSSQLPRPPPGLTNQKQASPSPWGTGGPRLA
RSWGGMNQESRFGSGSAWSDGTSRSSCWLLLRNLTPQIDGSTLRTICMQHGPLLTFHLGL
TQGSALVRYNSRQEAAKAQGALHMCVLGNTTILAEFVSEEEVARYFAHSQAEGAGSGGAA
GNGAPGSSGTGAAVASSGGSSPGSERPAVGSSSGGNGNGAGGGERSSGSGWQSLDGTGAS
SEVSSAQGPGLAIFSQWSTNGAGEGGVGGVESGRSGLWGGINTGYPSSSLWGAPQMEERH
QMDSSAGLLPGDLLGGGGDSI
NT seq
6006 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaagaagaaagacgagaaaaagaaaagggaaacctctcagaaggtg
ccagaacagaaaatcaaagtgccagaaccagccaagccctcctgttcccagccgctcgcc
accccaggctcagcgtcccccagccctggccccgtttccccgtcgtcccccagtcctggt
gcaggtgggggttccgcccaagtccctcctggtggcgggaacaatgcaaagcagcgaact
gctgtggccaacggacagccctcctcctccgccttgtctccttctggaagtcagagttcg
cagcagcagcagcgatacatgtctagagaagtcccaccgcgatttcgctgccagcaggac
cataaagtgctactgaagaggggccagccgccgctgtcctccatgctgttggggggaggg
gaaagcagtacgggagaggtgggaggaggcagttgctgggatgttgccccatccttacag
ggggcagaaggccctaatgcaaacgctgacggaaatacagattccaatgtgggttcatcc
tccccttcacccccaacctcatcctcattttgtgttgctgctctgtcgtcttctactact
acttcaacttatgcaaattccacatggggggccagctccagcggccagtcctcctctcag
ggctgcaggaaggtgtttatggatgggactgacctggatgactggcctagcatcactgct
ggccccaaactgagttctgaaggggccggaggagggatgcaggagcaggactgccctggt
aacaacaacagtagtgcctcatggggggagagaaacatgcagcagaaaggaggaactgca
ggaggaggaggaggaggtgaagggaacatggacaatatttccccacctcgctcttctcct
ctttcttcttcttcctcgcctattgaatgtgctcagccaagtagtgtgtgggtctcctcc
cccgcgtcccaagtggaggtaggccaaggctcggcagcatcttacaattccaaagtctcc
catcttcttcctgggcctcaggagagcccgttgggtggcagcagcagcgtccctggtgcc
aatttcaaccctaatgtgaacccgtctgcctggcccgccctggggcagagcgggacctcc
gttccggcttgtagcgcctcatcgcaacactcgtctgtgacttcagcttcctcattctct
gccagcaccactgtcatcaccactcagacactttcatctgtgaatcaaactggtctctac
cagcagcacactgaaaccgctgtgggggccaagactggagaacagcagcagcagcactta
ggaaatccagggccagagccgtgttcgggtgggacagggagagaagcaggaccaaatcaa
gaaggcgtcaacgagggaaactctgaggttggcggtgaaggtgaggcgaatacttctggg
tctctgtcttcctcctctgctgcctcgtcatcttggagcgctatgcctccggtgacctcc
gaacctggcgctggtgcctcacaggcagacgggtggggtggagggggtactggagctcag
gggcatgaagggaacgtttggaggtttggtagccaggacgacaaagctgggtggagcaag
gggaatggcggagggtcaaccaacccagttgtatctcagggagcttgggaaggaggaagt
acagaagtgaattggggtggcactgcagaaagtgtaggttctattaacttagcaatagga
agtggaggagaagtggatggaagcagcatcagcagcagcacggacagcggcggcggctgt
ttagaggactctgcctcgcaaaacttagcaactatgacaaaagcttgggacaatcagaaa
gggatggaaagtggagacgggacagtcgaggagtggggaggcgcaggagggcagggcgga
gctgttggaggcggcgggggaaattcgtcgtcgagcggcggtggatccgtcgctggaaac
ggaggcggacagaaggagcgctccgcgcggcaccattccgaccattcctccgaggcagac
gtggccttacttagcatgctcaacagatccgacctggacccccgggttctgtccaacacg
ggctggggccagactcagatcaagcagaacgtggcctgggacctggacacctcaaaaggt
gtagggaacagaaacgaaagaaacccttcatcttcctctgcattctcatcagcaaccata
aacactaccaccatccgcagctctaggtacccatccgagagcggttctgcgtccaatgat
gcgtcgtctggcagcctaaactctggccccgctactcccagggataattgggagggtggc
actaagcagtccaccagtggtccttttatgcctagcagcaccatgaggaagccaggatcg
ccggaagacgacatgcagggcagtcaaggaaaggcagctggaggatggggggaaccccca
cctgaaaaagagggcaaaggatggaggacggacgatcagcagtggggaggtcacagagga
ggaaggaaaaactggcaagactatgaacaacagggtagcgggtggggagatggagcagaa
gacaaaggaacaggggggtggaagggatctacaagaggagaaacaggtggttggggagag
gaatggggcaagaaagactcggcttctggagctgggtggggagacgggaggaggagagtt
ggaagcaactccgacgagggatcctcctggggaaacatggacgaagggggatctcagcga
agagggtggggcagtggaggagatgtgggtggaggcaaatcccaccaggactgggggggc
gccaaacccaacgcagcacagataccaaacagccaagcggcaccaatgaaagcccaaaat
catcatcatcatcaacaacagcagcagcagcaatcaccggaggggtttaacagccagccg
aacgtcgggggcggagctcaactttcaaagaaccagaaccaaagtttggggtggaccgct
ggcccaattcctcaaatatccgggggcgcgggggacccgctagagcccagcggctgggag
gaaccgtcgcctcagtccataagccggaagatggagatcgacgacggcacgtcagcctgg
ggggacccaacacgctacaacaacaagaatgtcaacctgtgggacaagaacagcaccgcg
ccggggtcgaaacaaggtccacaatgtccgccgccagcaatgcaacaacaacctccgagg
cggcagcacagcatcaactccaaccctggcagtggagcagtgggcatgtgggggggagct
gcacaaagcgtggatgatggtacaacgacttggagccaggcgtcggacgctgcgaccagc
tggagagaaccagacgattccagcaaatcatctggctggaggaacccttcacccaacccc
agcaaacctggagtgaagtcggtggacagctggggcgggaagggcgacggctccatcgcc
gcatcccggcacccgagctgggaggacgacgaggacggcggcggcggcggcggcggcgga
gtctggagcagcgctggttctcagggaagcggctcgtcgtttaactctggaggctggagt
cagagtcatgctgggaagagaggaaacatcaagagtggaggaggcgacagctggatgaat
ccagtatctcgccagttttccaacatgggtcttctgggtgatgatccaggcgtggaaaaa
aagatggacggggacaagagaggaataaatgactacaatggagagatgcgaagaggaggg
cgaagcggaggaggagggtaccgcatgcctagttccaaagacatgggccctggtgacatg
ggaccctatggtgataagatgggtggccatggagtgtttgctgcaggtggaggagggatg
tctcagcctcgagggatgcaccagcctggcatgcattcgatgaactcgtccccagggtta
cgggctcaagtgcctcatcagttcctttctgctcaggtgccgggtcccatgctgaagcag
atgccctctcctggcggcagcgtagggggagtgggaggtgtcggcggcgttggaagtgtc
ggcggggttggcggcggagtattcccgcctcagatttccccgcagcagcttgcagtgctc
agcaacatttacccccacatgcagcagttccatctggcttgtcagctgctgctacaacag
cagcagcagcagcaacagcaggtcctgcagaaccagaggaagttcccccaacctcagcct
ctcagacaacagacagacccgcagcagctggcgaggatcatggcgattctccagcagagg
cagcagcaagttggagctggaggagcaacagctggtggagggaactccaagctgtccccc
tctcacctgggaggaggcgtgtccaaacaatccatggtagaccccctcccacacactgga
atggggggtcccttatcagaccttcatgccaaatcacaaggaatgtattctgggctcaca
gctggtggcaacctgtcgacactagaactcagccccatgatggggggcatgaaggacatg
agtggacaacagtcccgctttaaatggatgatggagggacattcccctgctccgtctcct
ccagacacagcccttcacaagaacggccctgtacccagtacgataaaggttcgaggaggg
tctccgtactcccagtatgaaatgctggggagtgaagggttagggatcccacctcagggc
tctgcagacagctggcaccgaactcctggtagtaaaatgggaaacaaacctgccacttca
agctggcctccagagttccagcccggtgtaccatggaaaggaatccagagcactggagac
ccagaatccgacccctacatgacccctggtagagtcctcggctccccagcatccccaaat
ctcaatgatccggaccacccattactacgagacaatatagggccaaacccctccctcaac
acctcgctgccttcacctggtgcctggccctacagtgcctcagacagccccctcagcaat
gcacacagcacaggaaagtacgccgagtacaagcccagctggcctccagagcccatcgga
caaaacaaattatggaagaccaatcgcagtagctcgcagctgccgcgtccccctcctggc
ctgaccaatcagaagcaggcctcgccctccccgtggggaactggaggtccgcggttggct
cggagctggggagggatgaatcaagagtcaagatttgggtcaggctcagcttggagtgat
ggtacctctagaagcagctgctggctgctgctgagaaacctgacccctcagattgacggc
tccacgctaaggactatctgtatgcagcatggccccctgctgacctttcacctgggccta
acccagggcagcgctctggttcgatacaacagccggcaggaggcggccaaggctcagggt
gctcttcacatgtgtgttctgggaaacaccaccatcctggctgagtttgtgagtgaagaa
gaggttgcacgctattttgcacattcccaggccgaaggggccggctcgggaggagcggcg
ggcaacggagcgcccggttcatccggaacgggcgcggccgtggccagcagcggcgggagc
tcccctgggagtgagcggccggcggtgggctcatcttcaggtggaaacggaaatggcgcc
ggcggaggggaaaggtcgtccggctctggatggcagagtctcgacggtacgggcgcgtct
tcggaagtgtcttcggcccaaggaccggggctcgcgatattctcccagtggagcaccaac
ggggccggggaaggaggcgtcggcggggtggagagcgggcggtctgggctgtggggcggc
ataaacacaggatacccgagcagcagcctgtggggagcacctcaaatggaggaaaggcac
caaatggacagctccgccggactgttgcctggcgacctgctgggtggggggggtgactcc
atctga
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