Xiphophorus maculatus (southern platyfish): 102236954
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Entry
102236954 CDS
T02923
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma02010
ABC transporters
xma04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
102236954
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102236954
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xma02000
]
102236954
Transporters [BR:
xma02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
102236954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
102236954
NCBI-ProteinID:
XP_023184121
Ensembl:
ENSXMAG00000014714
LinkDB
All DBs
Position
23:408750..449809
Genome browser
AA seq
2282 aa
AA seq
DB search
MSVFTQLGLLLWKNFTYRRRQTLQLLVEIIWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGILCNANNPCFRNPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDR
NLEGFKELARALEVLQSSRSGFKLKHFLRDNETLSNFLQRNASLSRHAALQIAEADIDLE
QVVLRGWGVHLRDMCPRSGGTADMKDFVAIGDQQVAAQVQEILCQAPPTWLDRAEQNFMS
NLDFFKPIRRDVRSDPEAVQKVAGAINNLLVSLGSLAVELAGMKSWVDLRNEIVFLTRNA
TASPSVLYKAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNGSEDAAAALYDNSST
PFCNNLVQNLDSNPMSRMIWQALKPLLLGKILYTPNTPATQRIIHEVNRTFQELGVFRDL
GGMWEEMRPKVWDFMENSQQMDVIRTLLKNNITASFFHAQLAGTDWTVADVTNFLSKQPA
ELPGGTLTWREVFNETDQAIMSISHFMECVNLDKLEPVSTEERLVNRSMVLLEDRKFWAG
IVFPDIGPNATELPPKVNYKLRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFLY
LQDVIEQGIVRALTGIKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVSII
LKSVVYEKEARLKETMRIMGLDNGILWLSWFISSLVPLLVSAALLVLVLKKGNLLPYSDP
GIIFVFLGSYAVVTIMQCFLISTVFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGV
KVFASLLSPVTFGFGCEYFALFEEQGVGIQWKNLVSSPLQEDEFSLRTTIIMMYFDSFLY
GVLTWYIEAVFPGQYGIPRPWYFPFSKSYWFGEEGKSNKLPLNRKGNAAAVCVEEEPAHL
EPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRTDLSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVSAEIEHI
LQDTGLPHKRHSRTSTLSGGMQRKLSVALAFVGGAKVVILDEPTAGVDPYARRGIWDLLL
KYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKTQLGTGYYLTLVKKEAE
PSLSSCRNSSSTVSFTKKDEESASVSSSDAGLGSDHESEAAAIDHAAAICTLPDSSSVSG
LIQRHVPAARLVEDLGHELTYVLPYSAAKDGAFVALFRELDLKLQELGISSYGVSDTTLE
EIFLKVAEDNGVDTEVPSDGTLPVWRRRRTHAFGGGDHQSCLRPNTEDDNDCNDSDGDAD
CRETDWLGGTEGKGSVQVTGWSLKRQQFVALMWKRFLYARRSRKGFFAQIVLPAVFVCIA
LVFSLIVPPFGKYPSLELQPWMYEEQVTFFSSDDAPGDANMQKLLSALLDPPGFGTRCMD
GYSIREAPCTMGDDDWSTPLVPDSVKQLFSSRNWTMEHPSPACSCTCDGRKRMLPDCPAG
AGGLPPPEMKLSSSDTLQNLTGRNVSDYLVKTYADIIGKSLKNKVWVNEFRYGGFSLGAR
STQVLPAANEVDDAIERVRKVFELQKGSAADRFLDNLSGFINGLDTKNNVKIWFNNKGWH
SVAAFINVLSNGVLRANLPPGAEPGRYGITSFNHPLNLTKEQLSQVALVTTSVDVLVSIC
VIFAMSFVPASFVVFLIQERVSKAKHMQFISGVHPLLYWLANFTWDMCNYCVPATLVILI
FICFQQKAYVSSSNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGIN
GSISTFVMELFGDHEIGGINDILKNVLLVFPHFCLGRGLIDMVKNQAMADALERFGENRF
RSPLDWDMVGKNLFAMAVEGVVFFIITILIQYRFCIKPRPVSKLTKLGPLGEEDEDVARE
RHRIVQGLGQGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKM
LTGDTLVTSGEAFLAGKSILREIEDVHRNMGYCPQFDAINELLTGREHLELYAILRGVPE
GEVCDVAEWGIRKLSLLKYADKRAGSYSGGNLRKLSTAISLIGAPPVVFLDEPTTGMDPR
ARRALWNCIHSVIKEGRSIVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDG
YTIILRVAGPDPDLRPVMKFIESELSGSTLKEKHRNMLQYQLPSSLSSLAHIFSTFANNK
DALRIEDYSVTQTTLDQVFVNFAKDQSDDYLSKDVSVRRKEVIVDVLAPSSTCGGAEGES
VM
NT seq
6849 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgttcacacagctgggcctgctgctgtggaagaacttcacctacagacgccga
cagacgctccagctgctggtggagatcatctggccgctcttcatcttcttcatcctcatc
gctgtgcggctcaactaccccccctatgagcagcatgagtgtcacttccccaacaaggcc
atgccgtcggcgggaacgttgccgtggattcaggggatcctctgcaacgccaacaacccg
tgcttcaggaacccgacgccgggcgagtcgccgggcgtcgtcggaaacttcaacgactcc
ataatttcccgcctgttttcagatgccaagaagattttgctctacagccagaacgaccga
aacctggagggcttcaaggagctggcccgggccctggaggttctgcagagcagccgctca
ggtttcaagctgaagcatttcctgcgagacaacgagacgctttccaacttcctgcagagg
aacgcctcgctgtcccgacacgccgccctgcagatcgccgaggccgacatcgacctggag
caggtcgtcctcagaggctggggcgtccacctgagggacatgtgtccccgcagcggcggg
acggccgacatgaaggacttcgtcgccatcggagaccagcaggtggcggcgcaggtgcag
gaaatcctctgccaggctccgcccacctggctggaccgagccgagcagaacttcatgagc
aacctggacttctttaaacccatccggagggacgtccggtcggacccggaagccgttcag
aaggtcgccggcgccatcaacaacctcctggtcagtctgggttctctggccgtcgagctg
gccgggatgaagagctgggtggacctgcggaacgagatcgtgttcctgacgcggaacgcc
acggcgtcgcccagcgtcctctacaaggccgtctccaggatcgtgtgcggccacccggag
ggcggcggcctgcagatcaaatccctcaactggtacgaagacagcaactacaaggctctg
ttcggcaaccacaacggcagcgaggacgccgccgccgcgctctacgacaactcctccact
ccgttttgcaacaacctggtccagaacttggactccaacccgatgtcccggatgatctgg
caggccctgaagcctctgctgttggggaagatcctgtacacccccaacactccggccacc
cagaggatcatccacgaggtgaaccggaccttccaggagctcggtgtgttcagggacctg
ggcggcatgtgggaggagatgagacccaaagtgtgggacttcatggagaacagccagcaa
atggatgtaatcaggactctgctgaagaacaacatcactgccagcttcttccacgctcag
ctggccggcaccgattggaccgtggccgacgtcaccaacttcctgtccaagcagccggca
gagctgcccggtggcaccctcacctggagggaggtgttcaatgagaccgaccaagccatc
atgagcatttctcacttcatggagtgtgtgaacttggacaagctggaaccagtgtccact
gaggagcggctcgtcaaccgctccatggttctgctggaggaccggaagttctgggccggg
atcgttttccctgacatcggacccaacgccaccgagctgccgccaaaggtcaactacaag
ctgcgcatggacatcgacaacgtggagcggaccaacaagatcaaagacgcttactgggac
ccgggtcctcgggccgacccgtttgaggacatgcggtacatctggggcgggttcttgtac
ctgcaggatgtcattgagcaaggcatcgtcagagcgctgaccggcatcaaggagaagacc
ggcgtctacatccagcagatgccgtatccgtgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgccgctcttcatgacgctggcctggatgtactcggtgtccatcatc
ctgaagagcgtggtgtatgagaaggaggcgcggctgaaggagaccatgaggatcatgggc
ctggacaacggcatcctgtggctgagctggttcatcagcagcctggttccgttgctcgtc
agcgccgcactgctggttctggttctgaagaaggggaacctgctgccctacagcgaccct
ggcatcatcttcgtcttcctgggatcgtacgccgtggtcaccatcatgcagtgcttcctc
atcagcaccgtgttcgctcgcgccaacctggccgctgcctgcggaggcatcatctacttc
accctctacttgccctacgtcctctgcgttgcctggcaggactacattggatacggagtc
aaagtgtttgctagcctgctgtcccccgtgacctttggcttcggctgtgagtactttgcg
ctgtttgaggagcagggagtcgggatccagtggaagaacctggtgtcgagtcctcttcag
gaagatgagttcagcctccgcaccaccatcatcatgatgtactttgactccttcctgtac
ggagtcctcacctggtacatcgaggccgtgtttccaggtcagtacggcatccctcggccc
tggtatttccccttctccaagtcctactggtttggagaggaggggaagtccaacaagctt
ccactgaaccggaaaggaaacgctgcagctgtgtgtgtggaggaagagccggcccacttg
gagccgggagtctacatcgagaacctggtgaaggtttaccgtcacggaaagaaactggcc
gtggacggactgactctgggattctacgagggacaaatcacctcctttctgggacacaac
ggcgctggaaagaccaccacaatgtccatcctgaccggcctgttcccgccgacctctggc
accgcctacatcctggggaaggacatccggacagatctgagcgccatcaggcaaagcctg
ggcgtctgtcctcagcacaacgtcctcttcagcatgctgacggtggaggagcacatctgg
ttctacgcgcggctcaaagggctgtcagaggagcaggtgtcagctgagatcgagcacatc
ctgcaggacacggggctgcctcacaagcggcactccaggaccagcacgctgtccggcggc
atgcagaggaagctgtcggtcgccctggcctttgtcgggggggccaaggtggtgatcctg
gacgagcccacggccggagtcgacccctacgcccgcagaggcatctgggacctgctgctg
aagtaccggcagggccggaccatcatcctgtccactcaccatatggacgaggcggacatc
ctgggggaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcgtctctg
tacctgaagacgcaactggggacgggatactacctgacgctggtgaagaaggaggcggag
ccatcgctcagctcctgcaggaactcgtccagcaccgtgtccttcaccaagaaggacgag
gagagcgcctcggtcagcagcagcgacgctggactcggcagcgaccatgaaagtgaggca
gccgccatcgaccacgccgccgccatctgcacgctgccggactcgtcctcggtctccggc
ctgatccagcgccacgtcccagccgcccgcctggtggaggacctgggacacgagctgacc
tacgtcctgccatacagcgccgccaaggacggcgccttcgtagcgctcttcagagagctg
gacctgaagctgcaggagctgggcatctccagctacggcgtgtccgacaccacactggag
gagattttcctgaaagtggctgaagataatggagtggacactgaagtaccctcagatggg
acacttcctgtttggcggcgcaggaggactcacgcctttggaggcggcgaccatcagagc
tgcctgaggccaaacactgaggacgacaacgactgcaacgactccgatggagacgctgac
tgcagggagacggactggctgggcggcactgaggggaaaggttcggtccaggtgacgggt
tggagcctgaagaggcagcagtttgtggcactgatgtggaagcgcttcctgtacgcccgg
cgctccaggaagggcttctttgctcagattgtccttccggccgtgttcgtctgcatcgcc
ctggtcttcagccttatcgtccctccgttcgggaagtaccccagcctggagctgcagccc
tggatgtacgaggaacaggtgaccttcttcagcagtgatgacgctccaggggacgccaac
atgcagaagttactgagcgctctgttggacccgccgggctttgggacacgctgcatggac
gggtattccatccgggaggcgccctgcaccatgggggacgatgactggagcacccccctg
gtccctgacagcgtcaagcagctgttcagctccaggaactggaccatggagcatccatcg
ccggcctgctcctgcacctgtgacggcaggaagaggatgctgcctgactgcccggcagga
gccggcggtctgccgccgcctgagatgaagctgagcagctcagacactctgcagaacctg
acaggacggaacgtctcggactacctggtgaagacgtacgctgacatcatcgggaagagc
ctgaagaacaaagtatgggtcaacgagttcaggtatggaggcttctcattgggcgccagg
agcacacaggtccttcctgctgccaatgaggtcgacgacgccattgagagagtccgaaag
gtttttgagttacagaagggttctgctgcagaccggttcctggacaatctgtccggcttc
atcaatgggctggacaccaagaacaacgtgaagatttggttcaacaacaaaggttggcac
agtgtggctgccttcatcaacgtgttgagcaacggcgtcctgagagccaacctgccgcca
ggtgcggagcccggtcgctacggcatcacttccttcaaccacccgctcaacctgaccaag
gagcagctgtcccaggtggcgctggtaacgacctcggtggacgtcctggtgtccatctgc
gtgatcttcgccatgtccttcgtcccggccagcttcgtagtcttcctcatccaggagcgc
gtcagcaaagccaaacacatgcagttcatcagcggcgtgcatccgctgctctactggctg
gccaacttcacctgggacatgtgcaactactgcgtcccggcaacgctcgtcatcctcatc
ttcatctgcttccagcagaaagcctacgtctcctccagcaacctgccggttctggcgctg
ctgctgctgctctacggctggtccatcacgcccctcatgtacccggcctccttcttcttc
aagatccccagcacggcctacgtggtcctgaccagcgtcaacatcctcatcggcatcaac
ggcagcatctccaccttcgtcatggagctgttcggcgaccacgagatcggcggcatcaac
gacatcctgaagaacgtcctgctggtcttccctcacttctgccttggccgcggcctcatc
gacatggtgaagaaccaggcgatggccgacgccctcgagagattcggtgagaacaggttc
cggtcgcccctggactgggacatggtgggaaagaacctgttcgccatggcggtggagggc
gtggtcttcttcatcatcaccatcctcatccagtacaggttctgcatcaagcccaggccc
gtcagtaaactcaccaaactgggaccactgggagaggaggacgaggacgtggcgcgtgag
agacaccgcatcgtccagggcctgggacagggggacatcctggagcttcggcagctcacc
aaggtgttcaagcggaagcagaagccggcggtggaccggctgtgtgttgggattcctcct
ggagagtgcttcggtctgctcggtgtgaatggagctgggaaaaccacaaccttcaagatg
ctgacaggagacaccctggtgaccagcggagaggccttcctggccggcaagagcatcctg
cgggagatcgaggacgtccaccggaacatgggctactgccctcagtttgacgccatcaac
gagctgctgacaggaagagagcacctggagctgtacgccatcctcagaggcgtcccggag
ggggaggtctgcgacgtggcggagtggggcatcaggaagctgagtctgctgaagtacgcc
gataagagagcaggaagctacagcggaggaaacctgaggaagctgtccactgccatttct
ctgatcggagcgccccctgtggtcttcctggacgagccgaccacagggatggacccaagg
gcccgacgggccctttggaactgcatccacagcgtcatcaaggagggccgctccatcgtc
ctcacctcacacagcatggaggagtgtgaggctctctgcaccaggatggccatcatggtg
aacggcaggttccgatgtctcggcagcgtccaacacctgaagaacaggttcggggacggc
tacaccatcatcctgcgggtggcggggcccgacccggacctgcgtcccgtcatgaagttc
atcgagagcgagctgagcggcagcacgctgaaggagaagcatcgcaacatgctgcagtac
cagctgccctcctcgctctcctcgctcgcccacatcttctccaccttcgccaacaacaag
gacgcgctgcggatcgaggattactctgtcacccagaccaccttggaccaggtgtttgtg
aactttgcgaaggaccagagtgacgactacctgtccaaagacgtttcggtgagacggaag
gaagtgatcgtcgacgtgctggcgccgagctccacctgcggcggtgcagagggcgagagc
gtcatgtga
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integrated database retrieval system
