Xiphophorus maculatus (southern platyfish): 102237136
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Entry
102237136 CDS
T02923
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
102237136 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102237136 (supt5h)
03019 Messenger RNA biogenesis [BR:
xma03019
]
102237136 (supt5h)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
102237136 (supt5h)
RNA polymerase I system
102237136 (supt5h)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
102237136 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW5_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
DUF6406
Motif
Other DBs
NCBI-GeneID:
102237136
NCBI-ProteinID:
XP_023206948
Ensembl:
ENSXMAG00000004169
LinkDB
All DBs
Position
18:418648..433526
Genome browser
AA seq
1085 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVDENEEEAASPVGSDKVADEEGEDLDDDDDEYDEEE
DEEDDDRPRKKPKHGGFILDEADVDDEDEDEDRWSEGGEDILEKANEEAEASNLDHVVLD
EDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSVGEHYAGGPEELSDDITQQQLLPGVKD
PNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVESYKQTHVK
AAIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYV
EPSQNTISLKMIPRIDLDRIKAKMSLKDWYAKRKKFKRPAQRLFDAEKIRSLGGEVSHDG
DFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVVTESGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITILPKHEDLKDPLEFPAHELRKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHHGGGGAQQRGGGGGGGGFGRGRGRRDNELIGQTVRISQGPYKG
YIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHTGSTSAHGRTPMFGSQTPMYG
AGSRTPIYGSQTPMHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNDEEYDFG
FDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNPEQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGFQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIEQGSGDWVTTDILVRVKDSFMDLMGQVGVIRSVTGGMCSVFMQDSEK
VVSVSSDHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFL
GRLEH
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacagtgaggacagcgacttttctgacaaccagagcgagcggagcagcgatggg
gaggcggaggaggtggatgagaatgaggaggaggcagccagccctgtgggcagcgataaa
gtagctgatgaggagggggaggacctggatgatgatgatgatgagtatgatgaagaggag
gacgaggaagacgacgaccggccgaggaagaagccgaaacacggagggttcatcctggac
gaagccgatgtggacgatgaagatgaggatgaggatcggtggtcagaaggaggagaggac
attctggagaaagccaacgaagaggctgaagcttccaacctggaccacgtggttctggat
gaagaccactctggatccaggcggctgcagaacctctggagggactccagggaggaggcg
ctgggcgaatactacatgaggaaatacgccaagtcctccgtgggagagcattatgccgga
ggtccagaagagctttctgatgacatcacccaacagcagctacttcctggagtcaaggac
ccaaacctgtggaccgtgaaatgtaagattggcgaggagagggcgaccgccatcgctctg
atgaggaagttcattgcctaccagttcactgacacgcctctccagatcaagtcggtggtg
gcgcccgaccacgtcaaaggctacatctacgtggagtcgtacaagcagacgcacgtgaag
gccgccatcgagggcatcggcaacctgcgcatgggcctgtggaaccagcagatggttccc
atcaaggagatgaccgacgttctgaaggttgtcaaggaggtcaccaacctgaagcccaag
agctgggtccggctcaagagaggcctgtacaaggacgacatcgcccaggtggactacgtg
gagcccagtcagaacacaatctccctgaagatgattccccgcatcgacctggaccggatc
aaggccaagatgagtctgaaggactggtacgccaagaggaagaagttcaagaggcctgcg
cagcgcctgtttgatgccgagaagatcaggtctctaggtggggaggtcagccatgatgga
gacttcatgatctttgaggggaaccgttacagtcgcaaaggctttctgttcaaaagcttc
gccatgtccgccgtgatcacagacggagtgaagcccacgctgtcggagctggagaagttt
gaagaccagccagaggggatcgacctggaagtggtcaccgagtcgggtaaggagcgtgaa
cacaacctgcaggccggggacaacgtggaggtgtgtgagggagagttgatcaacctgcag
gggaagatcctgagcgtcgacggcaacaagatcaccatcttgcccaaacacgaagacctg
aaggacccgctggagttccccgcccatgagctcaggaagtacttccggatgggcgaccac
gtgaaggtcatcgccgggcgctacgagggcgacaccggcctcatcgtcagagtggaggag
aacttcgtcatcctcttctcggacctcaccatgcacgagctgaaggtgctgcccagagac
ctgcagctttgctcggagacggcgtcgggcgtggacgtcggggggcagcatgaatggggc
gagctggtgcagctggacccgcagacggtgggcgtcatcgtccggctggagagggagacg
ttccaggttctgaacatgcatgggaaggttctgacagtgcgccaccaggcggtgaaccgc
aggaaggacaaccgcttcgccgtggcgctggactccgagcagaacaacatccacgtcaag
gacatcgtgaaggtcatcgacgggccgcactcgggtcgtgaaggggagatccgccatctg
ttccgtggcttcgccttcctgcactgcaagaagctggtggagaacggagggatgttcgtc
tgtaagaccagacatctggttctggccggaggctccaagccgagagacgtgaccaacttc
acggtgggggggtttgccccgatgagcccccggatcagcagccccatgcaccacggcggc
ggaggtgctcagcagaggggcggcggtggcggcggcggaggatttgggcgtggccgggga
cgcagagacaacgagctgattggtcagacggtgcggatctcccagggtccttacaaagga
tacatcggcgtggtgaaggacgcgacggagtccacggcccgcgtggagctgcactccacc
tgccagaccatctctgtggaccgccagaggctgaccaccatgggagcgaagaggcacacc
gggtcgacctcggcccacggacgcacccccatgttcggctcccagacccccatgtacggc
gccggctccaggacgcccatctatggctcccagacgcccatgcacgacggaagccgtacg
cctcactatggctcccagaccccgctgcatgatgggagcaggactcctggtcagagcggc
gcctgggaccccagcaaccccaacacaccttccaggaacgacgaagagtacgacttcggc
ttcgacgacgagccgtcgccgtcgccgcagggctacggcgggacccccaacccccagacg
ccgggctacccagaggtcccctcccctcaggttaacccccagtacaacccccagaccccg
ggaacgccggccatgtacaacccggagcagtactcgccgtacgcggcgccgtcgccgcag
ggctcctaccagcccagccccagtccccagagctaccaccaggtggcgccctcacctgtc
gggttccagaacacgcactccccggccagctaccaccccaccccctcccccatggcctac
caggccagcccgagccccagccccgtgggctacagccccatgacgcccggagcgccctct
cctggaggatacaatccccacacccccggatccaacatcgagcaaggcagcggcgactgg
gtgaccaccgacatcctggtccgggtcaaagactccttcatggacctgatgggacaggtc
ggagtgatccggagcgtcacgggcgggatgtgctccgtgttcatgcaggactctgagaag
gtggtgagtgtcagcagcgaccatctggaacccgtcaccccaaccaagaacaacaaggtg
aaggtgatcctgggggaggaccgcgaggccacagggatcctgctgagcatcgacggagac
gacggcatcgtccgcatggagctggacgaccagctgaagattctcaacctgcggttcctg
ggccgcctggagcactga
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integrated database retrieval system
