KEGG   Xiphophorus maculatus (southern platyfish): 102237564
Entry
102237564         CDS       T02923                                 
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
  KO
K10858  DNA mismatch repair protein PMS2
Organism
xma  Xiphophorus maculatus (southern platyfish)
Pathway
xma03430  Mismatch repair
xma03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:xma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102237564 (pms2)
   03460 Fanconi anemia pathway
    102237564 (pms2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:xma03400]
    102237564 (pms2)
DNA repair and recombination proteins [BR:xma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    MutL homologs
     102237564 (pms2)
SSDB
Motif
Pfam: MutL_C DNA_mis_repair HATPase_c_3 HATPase_c
Other DBs
NCBI-GeneID: 102237564
NCBI-ProteinID: XP_023196127
Ensembl: ENSXMAG00000014877
LinkDB
Position
10:23763358..23773654
AA seq 826 aa
MSDVCTSEPAGAIRAIDKHSVHRICSGQVVLSLATAVKELVENSIDAGATNVEVKLKECG
AEQIEVSDNGRGVEEANFEGLALKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
ITCHESSQVGTKLVFDHKGHLVQQCPCPRQQGTTVTLQQLFYTLPVRHKEFQRNIKKEFS
KMIHVLQAYCIISTGVRITCSNQTGQGKRSTVLSTGGSQSMRDNIGAIFGPKQLQSLLPF
RQVSPLENIMEEYGLKDGDLPKQLFTISGFVSTGDHGVGRSASDRQFFFINSRPCDPVKV
SKLVNEVYHMYNRHQYPFVALNITVASDCVDVNVTPDKRQIFLHEEKLLLAILKSSLINM
YEAGVNKLSLNYTPTVSSASKEVHLPVEDKAEPAENNQPGTLSPTSTLNLAALKGAFSNQ
NSALSGSKSSSEKASKSGPSQKTLQCFFKGSVKSPVRPRTEATKGSLGARAELHGFRNEG
VSVREKDSERFLAVESPDPQHPDSSEPVVENVTHDSSVSQNLPEDPGFQTEARSPVEDSV
IIPDAKRARRDDPRFTAEQTSDTASSTADVPVCLRRKTVPLHFCLQALAAGIKRLQQQQR
QRAADRQRYRRFRANISPGENQRAEDELRREISKDMFKEMEIIGQFNLGFIITKLNSDIF
MIDQHATDEKYNFEMLQQHTVLHGQRLIVPQKLHLTAVSENVLLENVEIFQKNGFEFLID
EDAQVMERVKLVSLPTSRNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSVGEMKKLVIHMGEIEHPWNCPHGRPTMRHLANLEIISQD
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgtccgatgtttgcacttctgagcctgctggagccataagggccatcgacaagcactca
gtgcatcggatctgctctggacaagtagttctgagtctggccacggccgtcaaagagctg
gtggagaacagcattgatgcaggagcaaccaacgttgaggtcaagctgaaggagtgtggt
gctgaacaaatagaagtgtccgacaatggcagaggtgtcgaagaggcgaactttgaagga
ctcgcactaaagcatcacacgtcaaagctgagggatttctctgacctgatccacgtggaa
acattcggctttcgaggtgaagccttgagctctttgtgtgctctcagtgacctgagtgtg
attacatgccatgagtccagccaagtaggcaccaagttggtgtttgaccacaaaggtcac
cttgtgcagcagtgcccctgtcccaggcagcagggcaccacggtaacgctgcagcagctc
ttctacacgctgcccgtcagacacaaggagttccagcggaatatcaagaaggagttttcc
aaaatgatccacgtcctgcaggcctactgcatcatctctacaggagtccgtatcacctgc
tccaatcaaacgggccagggaaagcgtagcaccgtcctcagcaccggcggcagccagagt
atgagagacaacattggagccatatttggaccaaaacagctgcagagtcttctcccgttc
cggcaagtttctccgctagagaatattatggaggaatatggacttaaagacggagactta
cccaaacagctttttacgatttcaggctttgtgtccaccggagaccacggcgtggggcgg
agcgcctcagaccggcagttcttcttcatcaacagccgcccatgtgacccagtgaaggtc
agcaaacttgtgaatgaagtgtaccacatgtacaacagacatcagtatccatttgttgcc
ctgaacataactgttgcctcagactgcgtggatgtgaacgtaacgcctgacaaacgacag
attttccttcatgaggagaagctcttactcgccatcctaaagtcttctctcatcaacatg
tatgaagctggagtaaataagctcagcctgaactatacaccgactgtatcgtctgcatct
aaagaagttcaccttcctgtcgaagacaaagcagaacctgcggagaacaaccaacccggg
accctgagcccaacgtcaaccttgaacctcgctgccctcaaaggtgctttctcaaaccag
aacagcgccctctctgggagtaagtcaagctcggaaaaagcttccaaaagcgggccgagc
cagaaaacgctgcagtgtttctttaagggctcagttaaatcaccagtacgacccagaaca
gaggcaactaaaggcagcctgggagcgcgggcggaactccatgggttcaggaatgaaggg
gtgtcagtcagggagaaggactctgaacgattcttggcagtggaatcaccagatccacag
cacccagactcctctgaaccagttgttgaaaatgtaacgcacgactcatcggtgagccag
aacctccctgaggacccggggttccagaccgaagcacgttcacctgtcgaggactccgtc
attatccccgatgctaaaagagccagacgagacgatccacgtttcaccgcagagcaaacg
tccgacacggcttcctccacggccgacgtccccgtctgtctgcggaggaagaccgtgccg
ctgcatttctgtctgcaggccctggcagccggcatcaagaggctgcagcagcagcagaga
cagcgagctgcagacaggcagcgctacaggcgcttcagggccaacatcagccctggagaa
aaccagagagcagaggacgagctccgcagagagatcagtaaggacatgtttaaggaaatg
gagatcatcggtcagtttaacctgggcttcatcattaccaagctgaactccgacatcttt
atgattgaccaacacgccaccgatgagaaatataattttgagatgctgcagcagcacact
gtgctccacggacagaggctcattgtcccacagaaactccacctgactgcagtcagtgag
aacgtgctcttggagaacgtcgagatcttccagaagaacggctttgagttcctgatcgat
gaagacgcccaggtgatggagcgagtgaagctggtctccttgcccaccagtaggaactgg
acctttgggccggccgacatcgaagagctgatcttcatgctgagtgacagtccgggcgtc
atgtgccgcccgtccagagtcaggcagatgtttgcttctagagcgtgtcgcaaatcagtg
atgatcggaacagctctgagtgtcggtgagatgaagaagctggtgattcacatgggagag
atcgagcatccatggaactgtcctcatggcaggcccaccatgagacacctcgccaacctg
gaaatcatctcacaggactga

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