Xiphophorus maculatus (southern platyfish): 102237564
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Entry
102237564 CDS
T02923
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03430
Mismatch repair
xma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102237564 (pms2)
03460 Fanconi anemia pathway
102237564 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
102237564 (pms2)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
102237564 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
102237564
NCBI-ProteinID:
XP_023196127
Ensembl:
ENSXMAG00000014877
LinkDB
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Position
10:23763358..23773654
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AA seq
826 aa
AA seq
DB search
MSDVCTSEPAGAIRAIDKHSVHRICSGQVVLSLATAVKELVENSIDAGATNVEVKLKECG
AEQIEVSDNGRGVEEANFEGLALKHHTSKLRDFSDLIHVETFGFRGEALSSLCALSDLSV
ITCHESSQVGTKLVFDHKGHLVQQCPCPRQQGTTVTLQQLFYTLPVRHKEFQRNIKKEFS
KMIHVLQAYCIISTGVRITCSNQTGQGKRSTVLSTGGSQSMRDNIGAIFGPKQLQSLLPF
RQVSPLENIMEEYGLKDGDLPKQLFTISGFVSTGDHGVGRSASDRQFFFINSRPCDPVKV
SKLVNEVYHMYNRHQYPFVALNITVASDCVDVNVTPDKRQIFLHEEKLLLAILKSSLINM
YEAGVNKLSLNYTPTVSSASKEVHLPVEDKAEPAENNQPGTLSPTSTLNLAALKGAFSNQ
NSALSGSKSSSEKASKSGPSQKTLQCFFKGSVKSPVRPRTEATKGSLGARAELHGFRNEG
VSVREKDSERFLAVESPDPQHPDSSEPVVENVTHDSSVSQNLPEDPGFQTEARSPVEDSV
IIPDAKRARRDDPRFTAEQTSDTASSTADVPVCLRRKTVPLHFCLQALAAGIKRLQQQQR
QRAADRQRYRRFRANISPGENQRAEDELRREISKDMFKEMEIIGQFNLGFIITKLNSDIF
MIDQHATDEKYNFEMLQQHTVLHGQRLIVPQKLHLTAVSENVLLENVEIFQKNGFEFLID
EDAQVMERVKLVSLPTSRNWTFGPADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSV
MIGTALSVGEMKKLVIHMGEIEHPWNCPHGRPTMRHLANLEIISQD
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatgtttgcacttctgagcctgctggagccataagggccatcgacaagcactca
gtgcatcggatctgctctggacaagtagttctgagtctggccacggccgtcaaagagctg
gtggagaacagcattgatgcaggagcaaccaacgttgaggtcaagctgaaggagtgtggt
gctgaacaaatagaagtgtccgacaatggcagaggtgtcgaagaggcgaactttgaagga
ctcgcactaaagcatcacacgtcaaagctgagggatttctctgacctgatccacgtggaa
acattcggctttcgaggtgaagccttgagctctttgtgtgctctcagtgacctgagtgtg
attacatgccatgagtccagccaagtaggcaccaagttggtgtttgaccacaaaggtcac
cttgtgcagcagtgcccctgtcccaggcagcagggcaccacggtaacgctgcagcagctc
ttctacacgctgcccgtcagacacaaggagttccagcggaatatcaagaaggagttttcc
aaaatgatccacgtcctgcaggcctactgcatcatctctacaggagtccgtatcacctgc
tccaatcaaacgggccagggaaagcgtagcaccgtcctcagcaccggcggcagccagagt
atgagagacaacattggagccatatttggaccaaaacagctgcagagtcttctcccgttc
cggcaagtttctccgctagagaatattatggaggaatatggacttaaagacggagactta
cccaaacagctttttacgatttcaggctttgtgtccaccggagaccacggcgtggggcgg
agcgcctcagaccggcagttcttcttcatcaacagccgcccatgtgacccagtgaaggtc
agcaaacttgtgaatgaagtgtaccacatgtacaacagacatcagtatccatttgttgcc
ctgaacataactgttgcctcagactgcgtggatgtgaacgtaacgcctgacaaacgacag
attttccttcatgaggagaagctcttactcgccatcctaaagtcttctctcatcaacatg
tatgaagctggagtaaataagctcagcctgaactatacaccgactgtatcgtctgcatct
aaagaagttcaccttcctgtcgaagacaaagcagaacctgcggagaacaaccaacccggg
accctgagcccaacgtcaaccttgaacctcgctgccctcaaaggtgctttctcaaaccag
aacagcgccctctctgggagtaagtcaagctcggaaaaagcttccaaaagcgggccgagc
cagaaaacgctgcagtgtttctttaagggctcagttaaatcaccagtacgacccagaaca
gaggcaactaaaggcagcctgggagcgcgggcggaactccatgggttcaggaatgaaggg
gtgtcagtcagggagaaggactctgaacgattcttggcagtggaatcaccagatccacag
cacccagactcctctgaaccagttgttgaaaatgtaacgcacgactcatcggtgagccag
aacctccctgaggacccggggttccagaccgaagcacgttcacctgtcgaggactccgtc
attatccccgatgctaaaagagccagacgagacgatccacgtttcaccgcagagcaaacg
tccgacacggcttcctccacggccgacgtccccgtctgtctgcggaggaagaccgtgccg
ctgcatttctgtctgcaggccctggcagccggcatcaagaggctgcagcagcagcagaga
cagcgagctgcagacaggcagcgctacaggcgcttcagggccaacatcagccctggagaa
aaccagagagcagaggacgagctccgcagagagatcagtaaggacatgtttaaggaaatg
gagatcatcggtcagtttaacctgggcttcatcattaccaagctgaactccgacatcttt
atgattgaccaacacgccaccgatgagaaatataattttgagatgctgcagcagcacact
gtgctccacggacagaggctcattgtcccacagaaactccacctgactgcagtcagtgag
aacgtgctcttggagaacgtcgagatcttccagaagaacggctttgagttcctgatcgat
gaagacgcccaggtgatggagcgagtgaagctggtctccttgcccaccagtaggaactgg
acctttgggccggccgacatcgaagagctgatcttcatgctgagtgacagtccgggcgtc
atgtgccgcccgtccagagtcaggcagatgtttgcttctagagcgtgtcgcaaatcagtg
atgatcggaacagctctgagtgtcggtgagatgaagaagctggtgattcacatgggagag
atcgagcatccatggaactgtcctcatggcaggcccaccatgagacacctcgccaacctg
gaaatcatctcacaggactga
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