Xiphophorus maculatus (southern platyfish): 102237633
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Entry
102237633 CDS
T02923
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102237633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102237633
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102237633
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102237633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4140
Motif
Other DBs
NCBI-GeneID:
102237633
NCBI-ProteinID:
XP_023200681
Ensembl:
ENSXMAG00000014176
LinkDB
All DBs
Position
13:complement(11615649..11644744)
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AA seq
906 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIENRKLIETQMERFKIVERETKTKAYSKEGLGLIQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDSLQVESIRKIKDDVEYYRESSQDPDFEENDYIYDDLDLDEFPQPLLA
TSPPGPSHLEDEIFQNSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSASGLTSSSLVSVAGGGIGGSGSSHLSAVGGPFSNTLAS
SYSNATQQPPHPSVQQQAKNSPSSSAPINSSTSTNSHNASSASSPPSTQGLLNSNSLPQA
PSGPTATSNSLGLSLGPSLGKSSISTSPGLSGMPASLSNMVGLLSSSTPTPYAQAAASGT
ASSGLPGSLGGVSSTTTNSGVGAIGSSSIAVGGPTFSQGGMLGTASIVGSVGSGILGLGL
GSGQSGVQGSSLGPQSPIGSLAPGSGIGVIGSNSGSSGSAGSGVGGGSSSLSGRPPSRQK
QNGSTSHSAVVADSTTDSALNSATQSQSSQSSSLTSTANQLKDTGPSLLGSMGLSSTSPS
PASYSEAKTTSGGSLQNGPLSYSQPPESIKPQEPLSRSMAERAAPSSGIEGDVSSLHLTS
DIFPSSTTTPSGPPSAPQSSLSEVSILPSLGVCPLGPVPLSKDQLYQQAMQEAAWTHMPH
PSDSERIRQYLMRNPCPTPPFHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLA
AKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYL
EDRDLQ
NT seq
2721 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggggaaatagatcgatgtctgaaaaaagtagcggaa
ggagtggagcagtttgaagacatttggcaaaagcttcacaatgcagccaatacaaaccag
aaggagaaatatgaagcggacctcaagaaagagattaaaaagctgcagcgccttcgagac
cagattaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctaatagagaac
cggaaactcatagaaacgcaaatggagcgctttaaaatagttgaaagagaaaccaagaca
aaagcgtactcaaaagaaggactcggccttatccagaaggtggacccggcgcagaaggag
aaggaagaggtcggcacctggctaacgaacacgatagacacgttgaacatgcaggtggac
cagttcgagagtgaagtggagtctctttcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggatcgaggagctgaaaaagtttatcgagaagcatcggtatcacatc
cgaatgctggagacgatactgaggatgctggacaatgactcactgcaggtcgaatccatc
aggaagatcaaggatgatgttgagtactacagagagtcatcgcaggatccagattttgag
gagaacgattatatatatgacgatctcgacctggatgaattccctcaaccattacttgcc
acctccccaccaggaccctcacacttggaggacgagatcttccagaactccagcagcaca
ccgacctccaccacctcatcctcaccaatccctccttcgcctgccacttgcactacggag
aactcagaagatgacaagaagaggggacgttcaacggacagtgaagtcagtcagtcaccg
gtgaagaatggaaatccctcctcgtcattatcttcttcctcctcttcctcctcttcgtct
tcttccgcctcggggctcacctcatcctctctggtttctgttgcgggcggaggcatcggc
ggctctggaagcagtcatcttagtgcagtggggggtcctttctccaacaccttagccagc
agctacagcaacgccacgcagcagccgcctcacccgtcggtgcagcagcaggccaaaaac
tcgccgagctcttcggctcccatcaactccagcacctccaccaacagtcacaacgcctcg
tcggcgtcctcgccacccagcacacaggggctcctgaattcgaactccctgccccaggcg
ccttcaggtcctacggcgacttccaacagccttggcctcagtctggggccctctctgggg
aaaagctccatctccaccagccccggcctgtcagggatgccggcgtccctaagcaatatg
gtgggtcttctctcaagctccaccccaactccctacgctcaggcggccgcctcgggcacg
gccagctcagggttaccgggctctctcggcggcgtcagcagcacaacgaccaacagcggg
gtgggcgccattggtagcagcagcatcgcggtcggcgggccgacgttctcgcagggaggc
atgctcggcacggcttctatagtggggagtgtcggctcggggattctgggtttgggtttg
ggttcaggtcaatcgggagtgcagggatcttccctggggccgcagagccccatcgggagc
ttagctcctggaagcggaataggagttatcggaagcaacagcggcagctcaggatccgca
gggagcggagtcggaggaggaagctcatccctgtccggtcgaccgccgagcagacagaag
cagaatggtagcaccagtcacagtgctgtggtagcagatagcacaacagactccgccctc
aacagtgccacccaatcacaaagcagccaatcctcatctctgacctccacagccaatcag
cttaaggacactggtcccagtttacttggctccatgggtttgtcatccacctctccatcg
ccggcgtcctacagtgaggctaaaacaacaagcggtggaagccttcagaacgggccgctg
tcctactcacaaccacccgaaagcatcaagccccaggagcctctgagcaggtccatggcc
gagcgagcagcgcccagctcagggattgagggagatgtgtcctccctgcaccttacttca
gacatcttcccaagcagcactacgaccccctcggggcccccgtcagcacctcagtcctcc
ctgtcagaggtcagcatcctcccgtcactgggcgtctgtccactggggccagttcccctt
tccaaagaccagctctaccaacaggccatgcaggaggcggcgtggacgcacatgccccac
ccgtccgactcagagagaatcaggcagtaccttatgaggaacccctgccccaccccacct
ttccaccaccagatgccaccacctcattccgacactgtagagttttaccagaggctttcc
acggaaacgttgttcttcatcttttactacctggagggcacgaaggcccagtatctggca
gccaaggccctgaagaagcagtcatggaggttccacacaaagtacatgatgtggtttcag
aggcacgaagagcccaagaccatcactgatgagtatgagcagggaacatacatttatttc
gactatgagaagtggggccagcggaaaaaagaggggttcacctttgagtaccggtaccta
gaagaccgagacctccagtga
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