Xiphophorus maculatus (southern platyfish): 102238036
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Entry
102238036 CDS
T02923
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03013
Nucleocytoplasmic transport
xma03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102238036
03015 mRNA surveillance pathway
102238036
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
102238036
Enzymes [BR:
xma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102238036
5.6.2.5 RNA 5'-3' helicase
102238036
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102238036
mRNA cycle factors
Common to processing body (P body) and stress granule
102238036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
NAT10_TcmA_helicase
ATPase
UvrD-helicase
AAA_16
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
102238036
NCBI-ProteinID:
XP_005800903
Ensembl:
ENSXMAG00000002540
LinkDB
All DBs
Position
9:6676466..6700627
Genome browser
AA seq
1097 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQING
PDEGLHNGGMDDSVVKTSQLLGELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPGATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGH
VIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSG
YIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKT
VTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFL
ALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG
AGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQW
PQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQ
RSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRL
NVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKL
VNTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGTGPGQMAA
MNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHHGNGPNSQAS
QDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTY
QGERAYQHGGVTGLSQY
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcttacgggccgagttcccagaccctcaccttcctggacaccgaagaa
gcggagctgctcggagcggacacccagggctccgagtacgacttcaccgacttcactctt
ccgagccagacgcaaacacaaggccagacccagagccagttggacggacagatcaatggt
cctgatgagggtcttcacaatggaggaatggatgactctgtggtcaaaaccagccagttg
ttgggcgagctcaactttgaggaggatgaagaagacacctactacaccaaagatcttcca
atacacgcatgcagctactgcggcatccatgatccagcgtgtgtggtgtactgcaacacc
agtaagaagtggttctgtaatggccgtggtaacacgtctggcagccacattgtgaaccac
atggtgagggccaaatgtaaagaggtgactcttcataaagacgggcctctgggcgaaacg
gtgctggagtgctacaactgcggctgtcgcaacgtcttcctgctgggcttcatcccagct
aaagccgactctgtggtggtgctgctctgcaggcagccgtgtgcgagccagagcagcttg
aaagacatcaactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctg
tcctggttggtgaagatcccgtcggagcaagagcagctccgcgcccgtcagatcactgcc
cagcagatcaacaagctggaggagctctggaaggacaatcctggcgctacgttggaagac
ctggagaaacccggagtggatgaagaaccccagcatgtgctgctgcgctacgaagacgcc
taccagtaccagaacatcttcggccctttggtcaaactggaggccgactatgacaaaaag
ctaaaagagtcacagactcaagacaatataaccgtcaggtgggacctggggttaaacaaa
aagcggattgcatatttcacacttcccaagacggattcagatatgcggctgatgcagggc
gatgagatctgcctgcgctacaaaggagatctggctcctctgtggaaaggcatcggccat
gtcatcaaagtccccgacaactatggggatgaaattgccattgagctgcgcagcagcgtc
ggagcgcctgtggaaatccctcataacttccaagtggattttgtttggaaatcaacttcc
tttgacaggatgcagagcgccctgaagacgtttgctgtcgatgaaacctccgtgtccggt
tacatttaccacaaacttctgggtcacgaggtcgaagacgtcaccatcaagtgccagctg
ccgaagcgcttcaccgctccgggcctgccggacctgaaccactcacaggtttacgctgtg
aagacggtgctgcagcggccgctcagtctcatccaggggccgcccggcaccgggaaaacc
gtcacctccgccacgatcgtgtaccacctgtcccgacagggaaatggacctgtcctggtg
tgcgctcccagtaacatcgccgtggatcagctgacggagaagattgacaagactggcctg
aaggtcgtcaggttgtgcgccaagagccgggaggccatcgagtctccggtctctttcctg
gcgctccacaaccagatcagcaacatggacagcatgccggagctccagaagctgcagcag
ctgaaggatgagaccggagagctgtcgtctgctgatgagaagcgttaccgggctctgaag
cgcaccgccgagagggagctgctcatgaacgctgacgtgatttgctgcacctgcgttgga
gctggagatccccgtctggccaagatgcagttccggtccattctgatcgacgagagcacc
caggccaccgagccggagtgcatggtcccggtggtgctgggagcaaagcagctgattctg
gtgggcgaccactgccagctgggtccggtggtgatgtgtaagaaagcggcaaaggcgggt
ttgtctcagtctctgttcgagcgactggtggtgctgggaatccggccgatccgcctgcag
gtccagtaccgcatgcacccggctctcagtgccttcccgtccaacatcttctacgagggc
tccctgcagaatggcgttacagcagctgatcgcatcaagaaaggtttcgacttccagtgg
cctcagccggacaaacccatgttcttctacgtgactcagggtcaggaggaaatcgccagt
tctggaacgtcatacctgaacaggaccgaggcagcaaacgtggagaaaatcaccaccagg
ttgttgaaggcaggagcgaaaccggaccagatcggcatcatcacgccgtacgagggtcag
cgctcctacctggtccagtacatgcagttcagcggctccctgcacaccaagctgtatcag
caagtggaaatcgccagtgtggacgccttccagggcagagaaaaggatttcatcatcctg
tcctgtgttcgagccaacgagcatcagggcatcgggttcctgaatgacccgcggcgtctg
aatgtggcgctgaccagagcaaagtacggagtgatcatcgtggggaaccccaaagcgctg
tccaagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggttctggtg
gagggcccgctcaacaacctcagagagagcctcatgcagttcagcaagcctcgcaaactg
gtcaacaccatcaacccgggaggacgtttcatgagcaccgccatgtatgacgcccgcgag
gcgctcatcccaggttccgcctacgaccgcagcagcgctgctggacgtccgtccaacatg
tatttccaaactcacgatcagatcgggatgatcggaaccgggccgggtcagatggcggcc
atgaacatcccgatacccttcaacctggtgatgcccccgatgcctccgcccagctatctg
ggtcagaccaacggcccggctgcaggccgcggtgccatgaagggtaaacctggacgtgga
ggaaggcagcgggtccgcggctcggctcaccacggcaacgggcccaacagccaggccagc
caggacggggcttcccagtccttctcccaggggccactgactcagggttacatctccatg
agccagccctctcagatgagccaacctggcctctcccagccagagttgtcccaggatagc
tacctgggcgacgagttcaagtcccagatcgatgtagctttgtcccaggactcgacttac
cagggtgaacgtgcgtaccagcatggcggggtgactggactgtcacagtattaa
DBGET
integrated database retrieval system
