Xiphophorus maculatus (southern platyfish): 102238432
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Entry
102238432 CDS
T02923
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102238432 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xma03021
]
102238432 (smarca4)
03036 Chromosome and associated proteins [BR:
xma03036
]
102238432 (smarca4)
Transcription machinery [BR:
xma03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102238432 (smarca4)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
102238432 (smarca4)
Chromatin remodeling factors
BAF complex
102238432 (smarca4)
PBAF complex
102238432 (smarca4)
GBAF(ncBAF) complex
102238432 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
102238432
NCBI-ProteinID:
XP_023204887
Ensembl:
ENSXMAG00000006321
LinkDB
All DBs
Position
16:complement(21004516..21027709)
Genome browser
AA seq
1630 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQDNMHQMHKPMDPMHDKGMPDDPRYGQMKGMGMRPGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPGAGPMEGSGDPAQSMGQPNRAGPPGPSGPPGVVPGAA
GGPTPFNQNQLHQLRAQIMAYKMLARNHPIPEHLQLAVQGKRPMPGMQQQQPPPMPNMPP
SAGPGGGPPAGPGPVPVPVPGPAQTNYNRPHGMVGPNMAPPGPAGVPPAMQGQPANGPPK
SWPEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQLPPM
MLHQKQNRITPIQKPHGLDPVEILQEREYRLQARIVHRIQELEHLPGSLAGDLRTKATIE
LKALRLLTFQRQLRQEVVACMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIE
QERKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAVTTYHANTEREQKKENERIE
KERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKK
KKKKKPDAIEGGAPAMGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLEAWL
EMNPGYEVAPRSDSEDSGSEDEEEEDEDDAEDQPQPTTASTEEKKKIPDPDSEDVSEVDV
QHIIEHAKQDVDDEYGSASFNRGLQSYYAVAHAVTEKVDKQSSLMVNGMLKQYQIKGLEW
LVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRINGPFLIIVPLSTLSNWVYEFDK
WAPSVVKVSYKGSPQARRSFVPILRSGKFNVLLTTYEYIIKDKQILAKIRWKYMIVDEGH
RMKNHHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN
APFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQ
RVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLG
FSGGIVTGPDLYRASGKFELLDRILPKLRATKHKVLLFCQMTSLMTIMEDYFGYRNFKYL
RLDGTTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDL
QAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERR
AFLQAILEHEEQDEEEDEVPDDETVNQMIARSEEEFELFMRMDLDRRREDARNPKRKPRL
MEEDDMPGWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGNL
EDIEEEVRHKKTTRKRKRERDHDGSPATPSSSHRGRDKDDSGKKAKKRGRPPAEKLSPNP
PSLTKKMKKTVDAVVKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRS
HKYRNLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKDDESEGEESE
EEEEEMDEGSESESRSVKVKIKLSRKDKGDRGGKGQRRRGRGSRAKPVVSDDDSEDEQEE
ERSASGSEDD
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacccccgacccaccgatgggagggacgccgcggcccggtccctccccgggcccg
ggaccatctccaggaggcatgatgggccccagccccgggccctcaccgggctcggcccac
agcatgatggggcccagcccagggccgcccggctctggccacccccaccccccacaggga
ccctcaggatatcctcaggacaacatgcaccagatgcacaaaccaatggaccccatgcac
gataaggggatgcctgatgaccctcgctatggtcagatgaagggtatgggcatgaggcct
ggtggacacagcggcatgggaccgccccccagcccaatggaccaacattcccagggatac
ccctctccattgggcggctcggagcacgcgcccagccccgtcccggccaacggccccccc
tctggccccggagccggtcccatggagggcagcggggaccccgcccagagcatgggccaa
cccaaccgggccgggcccccgggtcccagtgggccgccaggggtcgtaccgggcgccgcc
ggcggacccacccctttcaaccagaaccagctgcaccaactcagggcccagatcatggct
tacaagatgctggcgcgcaatcacccaatcccagagcacctgcagctggccgtgcagggc
aagaggcccatgcctgggatgcaacagcagcagccgccccccatgcccaacatgccaccc
tccgccgggcctgggggcggcccacctgcggggccgggaccagtaccagtaccagtaccg
ggaccagctcagaccaactacaacagacctcatgggatggtaggtcccaacatggcgcca
cccggacccgcaggagttcctcctgctatgcaaggccagcctgccaacggaccacccaaa
tcatggcctgaaggaccaatggtgaacgccgctgccccatccaatcctccccagaagttg
attcccccccagcccaccggcagaccctcacccgccccgccgtccgtgcctccagctgcc
tccccggtgatgcccccgcagacgcagtcgccggggcaaccggcgcagctccctcctatg
atgctgcaccagaagcagaaccgcatcacgcctatccagaagccccacgggctggacccg
gtggagatcctccaggagagagagtacaggctacaagctcgtattgttcaccgcattcag
gagctggagcatctgcctggctcacttgccggtgatctgaggacaaaggccaccatcgag
ctcaaggctctgaggctgcttacgttccagagacagctgcgtcaagaggtggtggcttgc
atgcgtcgggacacagctttggaaaccgccctgaacgccaaagcctacaagcgcagcaag
cgtcagtctctacgagaggcccggatcacagagaagctggagaaacagcagaagatcgaa
caagagcgaaaacgtcgccagaaacaccaggaatacctcaacagcatcctgcagcatgcc
aaggactttaaagaataccaccgctccatcacagccaagatccagaaggccaccaaggct
gtgactacctatcacgccaacaccgagcgtgagcagaagaaggagaatgagcgcatcgaa
aaggagagaatgcggaggctgatggctgaggatgaggagggctaccggaagctcatcgac
cagaagaaagacaaacgcctggcctacctactgcagcagaccgacgaatacgtggccaac
ctcaccgagttggtgcgcgcccacaaggcagcacaagctctcaaagagaagaaaaagaag
aaaaaaaagaagaagccagacgccattgaaggcggtgcgcctgctatgggacctgatgga
gagcctctagacgaaaccagtcagatgagcgacctgccggtgaaggtcatccacgtggac
agcggaaagatcctgactggcgtcgacgcacctaaggctggccagttggaagcctggttg
gaaatgaaccctggctatgaagtggcgccgcgttcagacagcgaggacagcggttcagaa
gacgaagaggaggaagatgaggacgacgcagaggaccagcctcagcccacgacagcttca
accgaggagaagaagaagattccagaccccgacagcgaagacgtttcggaagttgacgtc
cagcacatcatagagcacgccaagcaggacgtcgacgacgaatacggcagcgccagcttc
aaccgaggcctgcagtcgtactacgccgtggcgcacgccgtcaccgagaaagtggacaag
cagtcctctctgatggtcaacgggatgctcaagcagtaccagattaaaggtctggagtgg
ctggtgtcgctttacaacaacaacctgaacggcatcctggccgacgagatgggcctgggg
aagaccatccagaccatcggcctcatcacgtacctcatggagctcaagcgcatcaacggg
cccttcctcatcatcgtaccgctctcgactttatcgaactgggtgtacgagtttgacaaa
tgggctccgtcagtggtgaaagtctcctacaagggctccccgcaggctcgccgctcgttt
gttcccatcctgcggagcgggaagttcaacgttctgctcaccacgtacgagtacatcatc
aaagacaagcagatcttagccaagatccgctggaagtacatgatcgtggacgagggccac
cgcatgaagaaccaccactgcaagctgacgcaggtcctgaacacgcactacctggcgccg
cggcgcctcctgctgacagggacgccgctgcagaacaagctgcccgagctctgggccctg
ctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcagtggttcaac
gctccgttcgccatgaccggggaaaaggtggacctgaacgaagaggagaccatcctgatc
atccgacgtctgcacaaggtgctccgcccgttcctgctgcgccggcttaagaaagaggtg
gaggcccagctgccagagaaggtggagtacgtgatcaagtgcgacatgtcggctctgcag
agagttctgtaccgccacatgcaggccaaaggcgttctgctgaccgacggctcggaaaaa
gacaagaagggtaaaggcgggacaaagaccctgatgaacaccatcatgcagctgaggaag
atttgcaaccacccctacatgttccagcacatcgaggagtccttttccgagcacctcggc
ttttccggaggaatcgtgactggccctgatctgtaccgtgcctcgggcaagttcgagctg
ctggatcgcatcctgcccaagctgagagccaccaaacacaaagtgctgcttttctgccag
atgacgtcgctcatgaccatcatggaggactacttcggttaccgcaatttcaaatacctg
cgtttggatggaaccaccaaagcagaagaccgcggcatgttgctgaaaaccttcaacgac
ccggcctcagagtactttgtgttcttgctgagcaccagggcaggaggcctggggctgaac
ctgcagtctgccgacaccgtcatcatcttcgacagcgactggaaccctcaccaggacctt
caggctcaagacagagcgcaccgcatcgggcagcaaaacgaggtgcgcgtgctccgcctt
tgcaccgtcaacagtgtggaggagaagatcctggcggcggccaagtacaagctgaacgtg
gaccagaaggtcatccaagccggcatgttcgaccagaagtcctccggctgcgagcggcgg
gccttcctgcaggccatcctggagcacgaggagcaggacgaggaggaggacgaggtgcca
gacgatgagaccgtcaatcagatgattgcaagaagtgaagaagagtttgagcttttcatg
cgaatggacctggacaggcgccgcgaggacgcccgcaaccccaagaggaagccgcggctg
atggaggaggacgacatgccaggctggatcttgaaggacgacgccgaggtggagaggctg
acctgcgaggaggaggaggagaagatgttcggccgcggctcccgtcagcgcaaggaggtg
gactacagcgactcgctgaccgagaagcagtggctcaaggccatagaagaaggaaacctg
gaggacatagaggaggaggtgcggcacaaaaagacgaccaggaagcgcaagagagagcgc
gaccacgacggcagcccggccacgcccagctccagccaccgcgggcgggacaaggacgac
agcgggaagaaggccaagaaacgcggccggccgccggcggagaagctctcccccaacccg
ccgtccctcaccaagaagatgaagaagaccgtcgacgccgtcgtcaaatacaaggacggt
aatggccgccagctgagcgaagtcttcatccagctgccgtctcggaaggagctgccggag
tactacgagctgatccgcaagccggtggacttcaagaagatcaaggagcggatccgcagt
cacaagtaccgcaacctcaacgacctggagaaggacgtgatgctgctgtgtcagaacgcc
cagacctttaacctggagggctctctgatctacgaggactccatcgtgctccagtctgtc
ttcaccagcgtgaggcagaagatcgagaaagacgacgagagcgagggagaggagagcgag
gaggaggaggaggagatggacgaaggctccgagtctgaatctcgatcggtgaaggtgaag
atcaagctgagccggaaggacaagggcgaccgagggggcaaaggtcagaggcggaggggc
cgcggctcccgggccaaacccgtcgtcagcgacgacgacagcgaggacgagcaggaggag
gagcgttcagccagcggcagtgaggatgattga
DBGET
integrated database retrieval system
