Xiphophorus maculatus (southern platyfish): 106699794
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Entry
106699794 CDS
T02923
Symbol
zcchc7
Name
(RefSeq) zinc finger CCHC domain-containing protein 7
KO
K12597
protein AIR1/2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106699794 (zcchc7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xma03019
]
106699794 (zcchc7)
03016 Transfer RNA biogenesis [BR:
xma03016
]
106699794 (zcchc7)
Messenger RNA biogenesis [BR:
xma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106699794 (zcchc7)
Transfer RNA biogenesis [BR:
xma03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106699794 (zcchc7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCHC
zf-CCHC_2
AIR2-like_ZnK4
Zn_ribbon_2
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
106699794
NCBI-ProteinID:
XP_023188836
Ensembl:
ENSXMAG00000012691
LinkDB
All DBs
Position
5:12848291..12903833
Genome browser
AA seq
645 aa
AA seq
DB search
MYSAYQDREELEDNLYQEDGDSDVSEANSELEFHLYSQLHYSSNAGELDEPEPGAEEKNN
RQESQEGGALEKTTDEDAKLRCTKQSNPTSSTDDHLKTKKDAKKKKSKIEPKIPKLLSSR
FEEVIVIDSSPGVISISDDDSDDEDDASVCALKVKGSQTLQTSTPALQKSQKRKGSLFVP
VAVLSSSSESSESESESEPLDSSDVDDLENWMILGQGRQDGDQSISLNVEGGSYSGSIDA
DEEEEKEEGSWIVSEKDKEAQIFNKGQGVRIAVQRMSNRYYTGKNVHCRNCNKTGHLSKN
CPHPKKMMPCFLCGTMGHQAINCPNKHCNNCGQPGHLIRSCNEKSYWHKQCHRCSMRGHF
FDDCPEIWRQYHITTKKGPPVKQGDDGAPSAAYCYNCSKKGHFGYECTKQRMFSGVFPSY
PFISHYDTVKDINRRQHRMEIKARDLGRNGNLSSASPAPPAPGPLRKKQKINHHNASPHL
KNTPHRIPNSYRPSPSHIIFNDDNFNDATPKTKMAKLPKSGGSAKPWKPKRAVPTTRDPV
PLSKLVVDEADDFPRGGGPQGNKEEKMRKKKKGFRTKQVSSSIADHVFRTGGERSQDSQS
SKKNQTGQKKRQKGRSNKTAKKQLRGATYSEEDNLFLIKQRKRSK
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgtacagtgcctatcaggaccgtgaggagttggaggacaacctctatcaagaggatggc
gactcagacgtgtcagaggccaacagtgagctggagttccacctctacagccagctccac
tactcctcaaatgctggtgagctggacgagccggagcctggagcagaggaaaagaacaac
aggcaggaaagccaggaaggtggtgcgctggaaaaaactacagacgaagacgcaaaactg
agatgtacaaaacagagcaaccccacatcctctactgatgaccatttaaagacaaagaag
gatgcaaaaaagaaaaaaagcaaaattgagccaaaaattccaaagttgttgtcatcacgc
tttgaggaggtcattgtgattgactccagcccgggcgtcatctctatctctgatgatgac
agtgatgacgaggatgatgcaagtgtttgtgctctaaaggttaaaggttcacagaccctg
cagacctccactcctgcattacagaaatcccagaaaagaaaagggagtctctttgttcca
gtggctgttctgtccagcagctctgaatcctctgaatccgagtctgaatcagaaccgttg
gattcatctgatgtggacgatctggagaactggatgatcctgggtcaggggaggcaggac
ggagaccagtccatctcactcaatgtggagggagggtcttacagcggcagcatagatgct
gacgaagaagaagaaaaagaagaaggaagttggattgtttcagagaaagataaggaggct
cagatctttaacaaaggccagggtgtcaggatcgcagtgcagcgtatgtctaaccgatac
tacactgggaagaacgttcactgcagaaactgcaacaagacaggacatctgtcaaagaac
tgtcctcaccccaaaaaaatgatgccttgctttctttgcggcactatgggtcaccaggcc
attaactgtcccaataagcactgcaacaactgtgggcagcctggacacctcatcaggtcc
tgcaatgagaaatcttattggcacaaacaatgccatcgctgcagcatgaggggacacttc
ttcgatgattgtccagagatctggaggcagtaccacatcacaactaagaaaggtcctcct
gtgaagcagggagacgacggtgctccgtctgctgcctactgctacaactgttccaagaag
ggacactttggttatgaatgtacaaaacagaggatgttcagtggggtttttcccagctac
cctttcatcagtcactatgacactgtgaaggacataaaccgcagacaacacaggatggag
ataaaggctagagatttgggaagaaatggcaatttgtcttctgcatccccagcccctcca
gcccctggaccactaaggaagaaacaaaaaatcaaccatcacaacgccagcccccacctt
aaaaatacgcctcaccgaatcccaaacagctacagaccaagtccaagtcacatcatcttc
aatgatgacaactttaatgatgctacacccaaaacaaagatggctaagcttcccaaaagt
ggtggcagtgcaaaaccatggaagcctaaaagagctgttcccaccacaagagacccagtg
ccattgagtaagctagttgttgatgaagcagatgactttcccagaggaggagggcctcaa
ggaaacaaggaggagaagatgagaaagaaaaagaagggctttagaacaaaacaagtgagt
tcatctatagcagaccatgtttttaggactggaggagagaggagtcaggactcacaatcg
tcaaaaaagaatcagacgggacagaagaaaagacagaagggacgttccaataagactgct
aaaaaacaactgcgtggagccacgtattcagaagaagataacctgtttctcattaaacag
cggaaacgcagcaaatag
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