Xiphophorus maculatus (southern platyfish): 106700380
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Entry
106700380 CDS
T02923
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106700380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
106700380
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106700380
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_IV
MutS_III
AAA_27
Motif
Other DBs
NCBI-GeneID:
106700380
NCBI-ProteinID:
XP_023182550
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All DBs
Position
21:1997501..2009871
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AA seq
430 aa
AA seq
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MSRGLEAGKTVKLEPNAVLGFYLRVTCKEEKSLRNNKKFTTLDVQKNGVRFTNSKLSSLN
EEYTKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQLDAVASFAVASVSAPVPYV
RPRLLDDGHRRLELLQARHPCMETDADTAFIPNDLSFVQGEKSFYIITGPNMGGKSTFIR
QVGLIALVAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKGVSTFMSEMLETAAILCSAT
ENSLIIIDELGRGTSTYDGFGLAWAISEHISSKIRCFCHELTALAAQQPAVHNLHVTALT
THNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVMAVAREKAEELEEFQEPVGDDSKRDE
EPEVKRRWTDKQVGEKVIQDFLEKVKALPVVTMTEEEVKAELRRIKQDLVAKNNTYISEI
LARCAPVKTA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaggtctggaagccggtaagacggtgaagctggagcccaacgccgttctgggc
ttctacctgcgggtcacgtgcaaggaggagaagagtctgaggaacaacaagaagttcacc
acgctggatgttcagaagaacggcgttcgcttcacaaacagcaagctgagctctctgaac
gaggagtacaccaaaaacagggaagagtacgaggaggcccagaacgccatcgtcaaagag
atcatcaacatcgcctcaggttacgtggatccccttcagacgctgagtgacgtcattgcg
cagctcgacgcggtggcgagcttcgccgtggcatcggtgtccgctccggttccgtacgtc
cggccccgactgctggacgacggccacaggcgtctggagctgctgcaggccagacatccc
tgcatggagacggacgcggacaccgccttcatacccaacgacctcagcttcgtccagggg
gagaagagcttctatattataacaggaccaaacatgggagggaagtccacatttatccgt
caggtgggtctgatcgcgctggtggctcagatcggctgcttcgtgccgtgcgagaaggct
gagctcagcgtgatcgacagcgttctggcccgagtgggagcaggagacagccaggtgaag
ggagtgtctaccttcatgtctgagatgttggaaactgccgccatcctctgctctgccacg
gaaaactcgctcatcatcatcgatgagctcggcaggggaacctctacgtacgatggcttc
gggctggcctgggccatcagtgaacacatctcctccaaaatcagatgtttctgccacgag
ctgacggccttggcggcacagcagccggccgtccacaacctgcacgtcaccgccctgacg
acccacaacacgctcacaatgctgtaccgagtcaaaccaggtgtgtgcgaccagagtttt
gggatccacgtcgctgagctggcctgcttccccccgtcggtgatggccgtggcgagggag
aaggcggaggagctggaggagttccaggaacctgtgggggacgattcgaagcgggacgaa
gagcccgaggtcaagagacggtggacagataagcaagtgggagaaaaggtgatccaggac
ttcctggagaaggtgaaggcacttcctgtcgtcaccatgactgaggaggaggtgaaggca
gagctcaggagaataaagcaggacttggtggccaaaaataacacgtacatcagtgagata
cttgcccgctgcgctcctgtaaaaactgcctga
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