Xiphophorus maculatus (southern platyfish): 111611611
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Entry
111611611 CDS
T02923
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
xma01001
]
111611611 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
xma04054
]
111611611 (ciita)
Enzymes [BR:
xma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
111611611 (ciita)
Protein kinases [BR:
xma01001
]
Serine/threonine kinases: Other
TAF1 family
111611611 (ciita)
Pattern recognition receptors [BR:
xma04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
111611611 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
nSTAND3
AAA_16
AAA_22
RsgA_GTPase
AAA_30
Motif
Other DBs
NCBI-GeneID:
111611611
NCBI-ProteinID:
XP_023204474
LinkDB
All DBs
Position
16:17673619..17695679
Genome browser
AA seq
1657 aa
AA seq
DB search
MAQFAEVLNQVRSVLTVALPGEVHALLEGLVEEGIISEAYRNSLNLHWLNDGIVPKFASK
PGCVELDEDLNSLGSMAQLDLNQEPTSQVRTGGSKSLASDHNVEQTESVSLIEEPNNTRF
NLEKNKWLQHENLQRNQEEMQELLEEVLMDLSYLNQDPLSSLSVYDCTLRSSDEKAELLS
GASSEPPSDNESINKGNEESQEAWLQQVEESARRIAVPLWQNWDRGRGMLQTLLPCVPSG
CSISDRMMLEGEAQSVVLDMEEEMELAAACSTLDTCVGDFECEELSFACDTDAGRSEREA
IHFSTLNRVAVFNTDDFRILAAARSASPVEACKATEGGYITQMLEGQFDVLCPIGKMADK
VDDLFCFTADAPYQQCGTQSGLSETTFGDLLHSDVPEDSRTALQDTSLNSLTEILTDYLE
DADMYNVDQDREFQEKTDLHCDAKMQEYDQDSSGLLDLVSGYISDLLWDDDYLASQLDPN
VLFSHDLGPDCVDDIIQKSDTAVALEVSDGANHSEQREQRKPTGKIKPERKRQRDALSTQ
CTDGNSRDSRVKRRKATEPPKTQEETAEPPAIHDAEAASVPAEPVGCLPTTPPGNLLVFP
PQSANSIPIQFITIPDPSAYKVVQLSSSPPPLIRLPLPNTAATPTYIFVPNPSPTRKRQV
PPLSPADGAVAPFLMSSFQPGSMSDTASKVTSPTAAPPSPTNEVSPCKESPKSPVVVEIP
QAVRDYIQQSKIHMSQTCQYMEAGLSLNAHYVNVSVSRREIARSGKNTNRCLDKELIITG
DIDRQKSSMGQSQIFDSLNGKRYNVLFGNAGMGKTTVIKKLCLDWSRDCIPQFDFVFLLD
GKQLALTEPVHSLQTLLLSQSSFAPHCADPEGVYAQILAAPKRVLIVFDGFDELRHYEIL
LQTQKKELVASLQKDSKAQAFTVKQLFSSILQRVLLPGCTLLLATRPRGTASQLLRRADS
FLEVCGFTPANVETYVSQYFSDPELRESALDSLKSSSYLNLLCWNPGLCHLVCTALEQCK
SEDALPRTLTALCHKVLCLKMEKDRGSTESLLEAEKINTAGPVENTDISNNSPGRRAQKN
NRTRPRAVACAASGNQRARKTKGQKKLDEENVCQDTNRTELLSQLCSIAWEGVKSNSSAV
PKGRTVSTKLRAFSLRTGLLLSQSLMKRTPSRREEMEGGGEVNNGIEEVEDKENKEKGGN
PQTSDEWEDRILLWANPFLQSYMAAVHLSLSRTVTEHSFLQTLPFQMGAKGRRKPQREEL
ELTQRIAAGLLFHNRTELQSLHSYSEAVFRDMVASKQALVMKHLEGLCFGDLNSTQILEA
CNYVYEASFTHQESGKDTSAKMLTRLALNLPELLTFRGVPLNPPDVFTVQNALRMGGAEG
RSFCLDVEDTGIQICGLRSLVALNNINTYRACIADVVTLWEELEKRSDEGLLQGAVSKFK
IHPLKATQVCHIEHLERLVSIHTSKRLSDSSDQSNSLLAEGVPAVKELYKLEFELGLENS
PLALPKLWDLLPGLHNLQHLDVENSKIGDKGAEKLANALVSLRSLEVLNLSENCIGDQGV
KKLALALKDLPKLHCLSLYSNVISDEGAESLAAVLPHMASLTDLDIKYNKMTDIGAQSLG
ASLRKCSKVKTLRMWNQCIPYGVFERLKQQDSRILWQ
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttcgccgaggtcctgaaccaggtgaggtcggttcttaccgtggccctgccc
ggcgaggttcacgctctgctggagggtctggtggaagaggggatcatctcggaggcatac
aggaacagtttgaatctgcactggctcaatgatgggattgtgcctaaattcgcgagtaaa
ccaggatgcgttgagctggatgaggacttaaattctttaggatccatggctcagttggac
ctcaaccaagaaccgacgagccaagtgaggacaggcggatcgaaatctcttgctagtgac
cacaatgtggaacaaacggaatcggtctcattaatagaggaaccaaacaacacaagattt
aacctggaaaaaaacaagtggctccaacatgaaaatcttcagagaaatcaggaggaaatg
caggaattattggaagaagttctaatggacttgtcctacttgaatcaagaccctctttcc
tcactgtctgtgtatgactgcactctcagatccagtgatgaaaaagcagaactgctgagt
ggtgcaagcagcgagcctcctagtgataacgaaagcataaacaaggggaatgaggaaagt
caggaggcgtggttacagcaggtagaggaatcggcaaggaggatagctgttcctctatgg
cagaactgggaccgagggcgagggatgttgcagaccttgctgccctgtgtgccaagcggc
tgttcaataagcgacaggatgatgctagagggtgaagcccagagtgtcgttttggacatg
gaggaggaaatggagcttgcagccgcttgcagtacgcttgacacctgcgttggcgacttt
gagtgcgaagagctaagctttgcgtgtgacacagatgcaggcaggtcagaacgagaagcg
atccacttctctaccctcaacagagttgctgtgttcaacacggacgatttcaggatcctt
gcagcagcgagaagtgcctcacctgttgaagcctgcaaagcaacagaggggggatacatc
acccaaatgctggagggccaattcgatgttctgtgtccaatcggcaagatggcagacaaa
gtggatgacctgttctgttttacggcagacgcaccatatcaacaatgtggaacacagtca
ggactgtctgaaaccacttttggggacctgctccattcagatgtgcctgaagacagcaga
actgccctgcaagatacctctcttaatagtctcacagaaatattaacagattatctagaa
gatgcagacatgtataatgtagaccaagatagggaattccaagaaaagacggatttacat
tgtgatgccaagatgcaagaatacgaccaggactcctcgggcctgttggatttagtttca
ggttatatatcggaccttttgtgggacgatgactatttagcttctcagctggatccaaat
gtgctcttcagtcatgatctggggcctgactgcgttgatgacatcatccaaaagagtgac
actgctgtggcactggaggtctctgatggcgctaaccacagcgagcagagagagcagcgg
aagccaacgggcaaaataaaacctgagagaaaaagacagagagatgccctgtctacacag
tgcacagatggaaactccagagactccagagtgaaaaggcgaaaagcaacagaaccacca
aaaacccaagaggaaactgctgagccacctgccattcatgatgctgaagcagcgtcagtt
ccagcagagcctgtgggatgccttcccaccactcctccaggcaacctcctcgtgttccca
cctcagtcagctaattccattcccattcagttcatcacaatcccagacccctctgcttat
aaggtggtccagctttcctcctcccctcctccacttattcggctcccactcccgaacaca
gctgctacgccgacgtacatcttcgttcctaatccctctccgacccgcaaacgccaggtt
ccaccgctctctccagcggacggtgcagtggcgccctttctgatgagttcatttcagcca
ggttccatgtcggacacagccagcaaagtcacgtcccccaccgcagctcctccgtccccc
acaaacgaggtatccccatgtaaggagtcgccaaagtcccctgtggttgtggaaatcccc
caggctgtgagggactacatccagcagtcaaaaatacacatgagtcagacttgccagtat
atggaggcaggcctgagtctgaacgcccattacgtgaacgtgagtgtgagccggagagag
atcgctcgctctgggaaaaacacgaatagatgtctggacaaggagctcatcataactgga
gatatagaccgtcaaaagagctccatggggcagagtcagatctttgacagcctgaatggg
aaacgttacaacgtgctgtttggcaatgctggcatggggaaaacaactgtgatcaagaag
ctgtgtctcgactggtccagagactgcatccctcagtttgactttgtctttctattagac
ggcaaacagctcgccttaacagagcctgtccacagcctccagacgctgctgctcagtcag
tcctccttcgctccacactgcgcggatcctgaaggagtttacgctcagatcctcgcagct
cctaaaagggtgcttattgtttttgatggatttgatgagctgcggcactacgaaattctg
ctccagactcagaagaaggagttggtggcctcactgcaaaaagacagcaaagcccaggcc
ttcacagtgaagcagctgttctccagcattcttcagagggtcctgcttccaggctgcacg
ctcctcctcgccacccgcccaagaggcacggcaagccagttgctccgccgcgcggacagc
tttctggaagtctgcggcttcactccggcgaacgtggagacgtacgtttcccagtacttc
tccgatcctgaacttagggaatctgctttggactccttaaaaagcagcagctacctgaat
ctcctctgctggaacccgggtctctgccacttggtgtgcacagcgttagaacagtgtaaa
agtgaggatgccttaccaagaactttaactgcactctgccataaggtcctctgcttgaaa
atggaaaaagacagaggaagcacagagtcacttcttgaggctgagaaaataaacacggct
ggacccgtggaaaatacagacatttctaacaattctccagggagaagagcacagaaaaat
aatcgcacaaggcccagagcggtagcgtgtgctgcttctggtaaccaaagagcaaggaag
acgaagggacagaagaaactggatgaggagaatgtttgccaggacaccaacagaacagag
ttgctgtcccagctttgctctatagcctgggagggggtgaaatccaactcatctgctgtt
cccaaaggacgaactgtctccaccaaactcagagccttcagcttgaggacgggcctgcta
ctttctcagtccctcatgaaaaggacaccttccagaagagaggagatggagggaggagga
gaagttaacaatgggatagaagaagtggaggacaaagagaacaaagaaaagggagggaac
ccacaaacgtctgatgaatgggaagataggatcctgttgtgggctaaccctttccttcag
agttacatggctgctgtccatttgtctttgtcaaggactgtgacagagcactcctttctc
cagaccctgcctttccagatgggtgccaaaggccgacggaaacctcagcgggaggagctg
gagctgacgcagaggatcgctgcaggcctcctgttccacaacaggacagagctacagagt
cttcattcatactcggaagcagtcttcagagacatggttgccagtaagcaggctttggtg
atgaaacacctagaaggtctgtgctttggggatttgaattcaactcagatcctggaggcg
tgcaactacgtctacgaagcaagtttcacgcaccaagagagtgggaaggacaccagtgcc
aaaatgctgacccgattggcattaaatctccctgaactcctaacattccggggcgttccc
ctcaacccgccggatgtgttcacagtacaaaacgctctcaggatgggtggagctgagggc
aggagtttctgtttggatgtggaagacactgggatacagatctgtggacttagatcgcta
gtggccctcaacaacatcaatacctacagggcctgcatagcagacgtcgtcaccctgtgg
gaggagctggagaagaggagcgacgaaggtctcctgcaaggagcggtgtccaagttcaag
atccatcctctgaaagccactcaggtctgtcacatagagcacctggaaaggctcgtcagc
atacacaccagcaagaggctctcggacagctccgaccaatcaaattccctcctggcagaa
ggggtgccagcagtcaaagagctgtacaagctggaatttgagcttggcctagaaaacagt
cccttggctcttcccaaactgtgggaccttctccctgggctccataacctgcagcacttg
gacgtggaaaacagtaagatcggagacaaaggagcagagaaactggcaaatgcattagtc
tctcttcgctcactggaagtactaaatttgtccgagaactgcataggtgaccagggtgtg
aagaagctagctctcgccttgaaggacctgcccaaactgcactgtttaagtctgtacagt
aacgtgatttctgacgaaggggcagagagtttagcagctgtcctcccacacatggcttcg
cttacagacctcgacattaaatataacaagatgacggatattggagcacaaagcttggga
gccagtttgagaaagtgctctaaagttaagactttgaggatgtggaaccagtgtatccca
tatggagtttttgagagactgaagcagcaggacagccgcatcctctggcaataa
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integrated database retrieval system
