Xiphophorus maculatus (southern platyfish): 111612148
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Entry
111612148 CDS
T02923
Symbol
alms1
Name
(RefSeq) Alstrom syndrome protein 1
KO
K16741
alstrom syndrome protein 1
Organism
xma
Xiphophorus maculatus (southern platyfish)
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xma03036
]
111612148 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xma03037
]
111612148 (alms1)
Chromosome and associated proteins [BR:
xma03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
111612148 (alms1)
Cilium and associated proteins [BR:
xma03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
111612148 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
111612148
NCBI-ProteinID:
XP_023208074
LinkDB
All DBs
Position
19:20940802..20954464
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AA seq
2013 aa
AA seq
DB search
MEPEQMATTPSHRLGDEDTIGPDGQTGPPEAQSRSIVQQDQRPLKIKTDVRELQLSQQKV
FQLEFQDSHLSPALSLLPLISGLEHSVTEYSFFQQGDPDFAPLRAFPDVSMVSERLRFPI
HESTTHSSEQSSLSQHPLAQITLLSDEGASSNCSPSQHDTQRKLSRGDSKETKLEALYDL
TGRNTVGIHKDENIFLNKDIPMQDPQADQREVGMQSSSSSSVSSESLTSIKSTGFCPDQP
RHTEACKDNMFERQGSPGEASPSQQQKRHKEISNITTGSRSTQPDDSSQELHKELLSEVR
KLSNFEAHEQPEGPTPTHELITPFLKESQGKPSGKPFSEWVHRDRDLWSSQTQTGSDGSY
LGFLPQSQSTPGVFFAPLKFDVKTKLAHLSAIESNIDTFYPSITGAHSADGRLPDTEDPL
EASHKVHSLPSFNYLQKVDAWKTKESSERIPPLEGLALHRPSGVPPKKGDEGGSNTFIQQ
PSTNQDATQISSSTPSGGSSPRRGEAVGGAPGDLENKGSATPPSASPFGRSQSPSSLGTV
VMVADKHQLTNTAPENKIQGLKDTLPSPSTATQPSRFKSLGHFSDVSELSSSQDSYTEIK
VGPSVGTSSVVSLELDNYAPYWTFKHSATSPSPPGPKELNIDERIPLYLQNLGIDQTPSK
ILTPFAPRGPIREPEFSPTDLCTSKGSSGTSSKSTQPSESSSPHKGEFSRSSVLSVDSSS
SIPLSTDSLGLVSSPSEQVRVKTSPPSDTEATQRESRPASCSGAGERSHSSVLIQNSKQD
FKSVAVNVSDTDTKSSVRSSDNTGQDAENSFVSTKALSEIRKLLSQAEDMISTASSTSSS
GPNAMLLFSDKDIFRPPNTTTSWLQNSSFSSSISTSTGGDIKSHSSPPWARPSSDSILTS
EKPNQSSTGLESLTSSEQPDSPSTQARRTEPEGCSAAPPDKIQTQPSTAASTTQLNAVLE
EDNGEEEKTIPNDLGAEGRSSFPVREDADQGVMSDSSSESSLAIRVAKLLQNESSATMTS
STPSVTDQEEGKAGEWMKSKVLGQQRDLLLLDVEDRRHIEEIKKQLLMRNPLKSQGSTDT
ESSSVASSVWVHKETNVPTAAETFPALSNANKQLAVHPDPHKTLPSNLHLDLEARVCAIA
AREGVTLSTKRPQALPSISIPTQRNSVTSSPSNSTPTSTSALSPASDPLHLAELSTGTSS
SSKCLSTNLDESEMIPLVQITREPPSVHDESTRKRRDTVGGQAEELSPTATQAVGKQDVG
TNVQSSSFLAISQGFRTGHFTLLPKNILSSAAHCPGSGAASAALRDSSLTACSPDEGVGS
SSPAEWYDGGKPAADRSDASTIDPQGKGITPSSPYPVEAPVAVLLPYKPRGSEELFYVPQ
MEADVSSTNRSDTTMESSHTGSDDAVPPTFSSEVLGDQDPRLDRGVAFRHQEGIYSKRLR
TAAVTMADPTHTVDAPAAADRGSPALIQGVKPSSQESSTFTRAPSINLKPSSRDQGTSPI
HFPQFEPTELAHDRFHSAHLERVQTDTRERELPPPAPRQGARTLDHLWQKFCDQRTKDEA
RPTGDKDASLLERLERLSRVIHRRQATQEAESQEERSSYFPGRTPRKERKEIKWSEHGGV
TDGGWEAGGGEAEHPTQLSHPSPPADRDQPDSMSTTSTVDTARLVRAFGADRVRNVNSSS
RLGKLYSTISKQRGDWRGTEADSSVTLTPSEESVVADSAQTSSSHTFSPQRRPSRVLTAK
RAVRAVNRSIQAGELEIVRNGTRRNTRDVGTTFPSPAEARTYGQTSSSSGTVGGRGGRWR
VLPKSNSNQRQKKSKRSPSKPYPKSVSWFIPADNPRSEMRKENRPERSNMAWFEPHSRTR
PWRELLRQRQVRDLNHKAKISSSGLARVSLQEALEIRRPDFISQSKQRVRCLALQAEERR
IQSAFSRERNLLFDQLEEPQRLPRPAGTALLRRAVPRKEMIQRSKQIYENLPEVRRRREE
ERRKAEYQSYRLNAKLYNKRVRNRVLGRRTAWQ
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggaaccagaacagatggcgacgactccttctcatcgactaggagatgaagatacaatt
ggtcctgatggacaaacaggcccaccggaagcccaaagtcgaagtattgtccaacaggat
cagagacctcttaaaataaaaacagatgttcgggagcttcaactgtcacagcaaaaagtt
tttcagctagaattccaggacagtcatctgtctcctgctctgtcactgctgcctctaatc
tcaggacttgagcacagcgtcactgaatactctttcttccagcaaggtgatccagatttt
gctcccctaagggcttttcctgatgtttctatggtatcagagaggctccgttttcctatc
catgagagcaccacccattcctctgagcagagctcactttcccagcatcctttggctcag
ataaccctcctttccgatgaaggagcaagcagcaactgctccccatctcagcatgacaca
caaagaaaactatcaagaggagatagcaaagaaactaagttggaagcactatacgacttg
acaggcaggaatacagttggaattcataaagatgaaaatatctttctgaataaagacatt
cctatgcaggatcctcaagccgaccagagagaggttggcatgcaaagcagcagcagcagc
tctgtttcctctgaatccctgacctctattaaaagcactggcttttgtccagatcagcca
cgacacacagaagcttgcaaagacaacatgtttgaaagacaaggttcaccaggtgaagcc
agtccttcccaacagcagaaaaggcacaaagaaatcagtaacatcactactggttcccgc
tcaactcagcccgatgatagcagccaagagttgcacaaagagctgctgtctgaggtacgg
aaactcagcaactttgaagcacacgagcaaccagagggtccgacaccaactcatgagctg
atcacaccttttctcaaagaatcgcaaggcaaacctagtgggaagccattttcagaatgg
gttcacagagacagagatctatggtcttcacagacccaaacaggaagtgatggctcctac
cttggcttccttccacagtctcaatctacaccaggcgttttctttgcgccactgaaattc
gatgtcaagactaaactagcacatctttcagccatagaatctaacatagataccttttac
ccatcaatcacgggtgcacactcagctgatggccgtctcccagacacggaagatcctctg
gaggcttctcacaaagtccattccctccctagtttcaactatctgcagaaagttgatgcc
tggaagacaaaagaaagctcagagaggatcccaccattagaaggcctagcactgcacaga
ccttcgggagttcctcctaaaaaaggtgatgagggaggatccaacacctttatccagcag
ccttccaccaaccaggatgctacacagatctcttcttctacaccttcaggaggttcttct
cctagacgaggagaggctgtaggcggagctcccggtgacttagagaataagggatctgct
acgccaccttctgcctctcccttcggcagatcacagtccccctcgtcccttggtacagtt
gtcatggtcgctgacaagcaccagctgaccaacactgctccagaaaataagattcagggc
ctgaaggacactcttccttcacccagtaccgccactcaaccctcacgtttcaagagcctt
ggtcacttcagtgacgtctccgaactctcaagttcccaagatagctacacggaaattaaa
gtaggaccttctgtcggaacctcttctgtcgtcagccttgagcttgataattatgccccc
tactggacttttaaacattcagcaacgtcaccatctcctccagggcctaaagagctcaac
attgatgaacgaattcctttgtatcttcaaaaccttggtatcgaccaaactccatcaaaa
atcctgactccgtttgcacctagagggcccatcagagaaccagagttctctcccactgat
ctctgtactagtaaaggatcttctggaacttcttcaaagagcacccaaccttcagagagt
agcagtccccataaaggcgagttctccaggtccagcgttctgtcggtggattctagttca
tccatccctctcagcacggacagtcttggtctggtttcctcgccgtcagagcaggtcaga
gtgaagacctctcctccgtccgacacagaagccactcagagggagagcagaccggcctcc
tgctccggggccggtgaacgctcccattcctctgtcctgatccaaaacagcaagcaggat
ttcaagtccgtcgctgtaaacgtctctgatacagatacaaagtcatctgtccggagcagc
gataatacgggtcaagatgcggagaattcctttgttagcacaaaggcattgtcagagatc
cgtaagctactctctcaagcagaggacatgatatctacggcgtcttccacgtcttcgtcg
ggacctaatgcaatgcttctcttctctgataaagacattttcaggccaccaaacacaaca
accagctggctgcagaactcctcgttttcttcctctatttccacctccactggcggagac
ataaagtctcattcctctccaccatgggccagaccttcctcagactccatacttacatca
gagaaaccaaaccaaagctccactgggctagagagtttgacgtcgtctgagcaacccgat
agtccatccacacaagcccggcggacagagccggaaggatgcagcgcggcacctccagac
aaaatacagacacagccgtcaacagccgcaagtacaactcagttgaacgcggttcttgaa
gaagataatggagaagaagaaaagactatacctaatgatcttggtgcagagggtcgctct
tcctttcccgttcgcgaggacgctgaccagggagtgatgagcgacagcagcagtgagagc
tcactggcaatcagagtggccaaactgctgcagaatgaatcgtcagccaccatgacgtcg
agcacgcccagcgtcacagatcaggaagagggcaaggccggagagtggatgaagtcaaag
gttttgggacagcagcgtgacctgctgctgttggacgtagaagacagacggcacattgaa
gaaatcaagaaacagctcctgatgagaaaccctctcaaaagccaagggagcacagataca
gaaagcagcagcgtggcctccagtgtttgggtccacaaagagaccaatgtccccacagca
gccgaaacgtttcctgccctcagcaatgctaacaagcagctagccgtccacccagaccct
cacaagacgctaccgagcaaccttcacctcgatctagaagccagagtttgcgcgatcgct
gccagggaaggagtaacactctctactaaaagaccccaggcccttccatccatcagcata
cccactcaaaggaactctgtgacctcctcaccttccaattcgacccccacttccacttct
gctctaagtccagcctcagaccccctccacctggcagagctttccactggaacatcatca
tccagtaaatgtctttcaaccaatctggatgaatccgagatgattcctttagtccagatt
acaagagaaccgccatctgtgcatgatgaaagtaccagaaagaggcgagacacggtggga
ggccaggctgaggaactttccccaaccgccacacaggctgtaggtaaacaggatgtgggg
acaaatgtccagtctagttcttttctggccatcagtcagggattcaggacaggtcatttc
actctgctgcctaaaaatattttgtcctccgctgcccactgtcctggttctggtgccgcc
tccgccgccctgagggactcctctttgaccgcctgcagtccagacgaaggtgtcgggtcg
tcgagtccagcagaatggtacgatggtgggaagccggcggctgacaggtcagacgcttcc
accattgatcctcagggaaagggcatcacaccgtcgagtccttatcctgttgaagcacct
gtggctgtgctgctgccttacaaacctcgcggcagtgaggagctcttctatgtccctcag
atggaagctgatgtttcctccaccaaccggtccgacaccaccatggagagctctcacaca
gggtcagacgacgccgtgcctcccaccttcagcagcgaagtccttggggatcaggacccc
aggctggaccgcggagtcgcgttcagacaccaggagggcatctacagcaagaggctgaga
acagctgccgtcacaatggcagaccccacacacacagtagatgctcctgcagcagcagac
cgagggtctccagctctgatccagggtgtgaagccgtcttcccaggaatcatctaccttt
accagagcgccttcaatcaacctcaaaccctccagtagggatcagggtaccagcccgatc
cacttcccccagttcgaaccaacagagctggctcatgacaggtttcattcagcacactta
gaaagggtgcaaaccgacaccagagagcgagaacttcctccaccggccccccgacagggc
gctaggaccctggaccacctgtggcagaagttctgtgatcagcggaccaaggacgaggcg
cgtcccaccggcgataaagacgcttccctgttggagcgactggagcgtctgtctcgcgtg
attcatcgcaggcaggctactcaggaagccgagagccaggaagagcggagtagttacttt
cctggaaggacgccgagaaaagaacgaaaggagattaaatggagcgaacacggcggagtg
acagatgggggttgggaagcggggggaggagaggcggaacatccaacccaactgagccac
ccgtcccccccagcagacagggatcagccagatagcatgtcaaccacgtccaccgtggat
acggcccgactcgtcagggccttcggcgccgacagagtcagaaacgtgaacagcagctct
cgacttggtaaactgtacagcaccatcagcaaacagaggggagactggagaggaacggag
gccgactcctctgttaccctcacaccatccgaggaatcggttgttgctgattcagcacaa
acatccagctcacacacgttctcaccacagcgcagaccttccagggttctgacagccaag
agggctgtaagagccgtcaacagaagcatccaggcaggcgagctggagattgttcgtaac
ggaactcggcggaacaccagagatgtcgggactacgttcccctctcctgcagaagccagg
acttatgggcagacctcctcttcgtcaggcactgtgggaggaagaggaggaaggtggaga
gttcttcctaaatcaaacagcaaccagaggcagaagaagagcaagaggagcccctccaag
ccttaccctaaaagtgtttcgtggttcatcccggctgacaacccgaggtctgagatgagg
aaggagaaccggccggagaggtcaaacatggcgtggtttgagccgcacagcagaacccgt
ccgtggagagagctgctcagacagagacaagtccgagatctgaatcataaagccaaaata
tcgtcctctggcctggcacgggtctccctgcaagaggctctggagattcggcggccagat
ttcatctctcagtccaagcagagggtgagatgtctggctctgcaggccgaggagaggagg
atccagtctgcgttcagccgagagagaaacctgctgttcgaccagctagaagaacctcag
aggctgccgagacccgcaggcacggcgctgttgaggagagcagtacccaggaaagagatg
atccagaggtccaaacaaatttatgagaatcttcctgaggtgcggcgcaggagagaggag
gaaaggcggaaggccgagtatcagtcgtacaggctgaacgccaagctgtacaacaagaga
gtgaggaaccgagtcctgggcaggagaacagcctggcagtga
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integrated database retrieval system
