Xiphophorus maculatus (southern platyfish): 111612345
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Entry
111612345 CDS
T02923
Symbol
fanca
Name
(RefSeq) Fanconi anemia group A protein isoform X1
KO
K10888
fanconi anemia group A protein
Organism
xma
Xiphophorus maculatus (southern platyfish)
Pathway
xma03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
111612345 (fanca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xma03400
]
111612345 (fanca)
DNA repair and recombination proteins [BR:
xma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
111612345 (fanca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fanconi_A_N
FANCA_arcN
FANCA_helical
FANCA_CTD
Motif
Other DBs
NCBI-GeneID:
111612345
NCBI-ProteinID:
XP_023209208
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All DBs
Position
2:41734..74548
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AA seq
1443 aa
AA seq
DB search
MSLQTSCGSQKRPLCSLLAGRGLKKPKLDDGERLQEAAVQLLDRNQNLCSLFQELQNPDP
CRMICFQNVEQNRNPEQNQAASDADPLNVAGLLVGSELRRQAERRGVSVGAVSVKTMLDR
LEEIVGGQEDKLRQMFTSSQRVQLQVLLEAGKLLLYQGVFCPRLLWAEYRRDQKHPHLEL
LYFLHLYNILTLDYIIESDDAVASWLPGQLKALCCWTPPQEEEETRRVQQEVLSTVVGVL
VASPRSLVLDELLHWFLDIKEECDEGAERWIQTLDASLCGGSVSPEALQRFFAHCLTQIF
TWNPQLTVSDAVTSQNDWTVAKAGRRLTSLCCKLAAIFSVEQLLHHLQQVLETHEVNWKH
VLVFVSTLLVYDQLAQPSLSELLCHLLSSAFRGYDLEKLITAFLLARQGALEGAGVFPSY
TDWFKMSFGGRSGFHAGSKKSLVFLLKFLSDLVPFEPPQYLKVHILHPPFVPPKHRSLLM
EYVTLAKTRLADLQESVEDMGLYEDVSAAGASLQSQAAQDVEKAVCLFESSGRIPATVME
ASIFRRPYFLTRFLPALLKPRAVRTFSVFVRAVRTFGVLSRFFSSFQLPLEADAQMNFIE
ALKQAEKIPAAQYSQYVESCQKRRQQSGSPQRPGVPLAVLQEQLQEFTELLAAGRDPESL
AQLSRISHTLSVVCPGSDDPVGPAAAPLLPELLLKVNLVLVLDHVGSAVLKRLCCDLQVA
DLILQSFCQSLLVASRGNPPNRQSLWGSRFVCVLLDNRQLLSSVIHRLKDLFNRQAASLK
PAHILGLAAFIVHLQAAQPGPAQPGPVSVEEALGSAVLSGSRSSMLFSVRLAVAAVSYGL
CRGQSASPQRLQDFVPRSLYKKLLFLVPRLFPEARIRPEGQGGDGPTGGHLGDGLSLLWS
FTDGTSWTKTVLHLWRHAAFQQLQQLQLYQLCFSEWLHEELRVQRNSDVLSDAERQEYQQ
WACWELYLPRPEEQGGCGGDPRVLCSRLLTAVMEPPPSREMNLENLDFSPGSSGTGTCLP
DLLSRLQELVYEAEVGELSGRRGHLGDFLLRVVSEKCSASSGSISSRLSLQRTMEAWNRV
LLTLPPAMFFKIKAEAGRSIVDCSQLLQHITQLQRKACPPAGVLPCAVTVHLLKGLLFAV
GQCGRPAAEVDRVWSLMSTSCPLLLISAVRWWQQISPVLVSLWIRLQDAEPFPEQLQLLS
ACRLWACSLRAGPVLVQIPPGPVLVQAASLHGSFRGGAEPQQNFREVLDGLREAENQQVL
VSLLFLFVTDFLSELLDPQEKNSGRSKWLCSELLAVLVNSADWLLLFRSNELDPEPDPVT
LTVSDDCSRLMPWAVCSLLQQQSAAFHQRALRCPGFLHSATLWYLAVLRLFLDGEAPASA
RQVEPTRVLDRTKQFVLSLIRQAPAAALSCSQWRQLETRCADLDPELAATLSIHLDHPRV
GFL
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgtccctccaaacgtcctgtgggtcgcagaaaaggccgctctgctccctcctcgctggc
cgcggcttaaagaagccaaagcttgatgatggtgagcggctgcaggaggccgcggtccag
ctgctggaccggaaccagaacctgtgcagcctgttccaggagctgcagaacccggatcca
tgtcgcatgatctgcttccagaacgtggagcagaaccgaaacccggagcagaaccaagca
gcgtctgatgctgaccctttgaacgttgcaggactgctagtggggagcgaactgcggcgt
caggccgagcgacggggcgtctccgtcggagccgtgtcggtgaagacgatgttggacaga
ctggaggagatcgttgggggacaggaggacaaactgaggcagatgttcacgtcttctcag
agagtccagttgcaggttctgttggaggctggcaaactgctgctataccaaggagttttt
tgccccaggctgctgtgggcggagtaccgaagagatcagaagcatcctcacctggagctg
ctgtactttcttcacctttacaacatcctcactctggactacatcatagaaagtgatgac
gccgtcgcatcatggctgcccggtcagttaaaggctctctgctgctggacgcctccgcag
gaggaagaggagaccagacgagttcaacaggaagttttatccaccgtggttggagtcctg
gtggcatcgccgaggagtttggtactggatgagctgcttcactggtttctggacatcaag
gaagagtgcgatgaaggagcagagcgatggattcagactcttgatgcttcactgtgtgga
ggttcagtgtcaccagaagctcttcagcggttctttgctcactgcctgactcagattttc
acctggaatcctcaactgacagtgtcggacgctgtgacttcgcagaacgactggacggtt
gctaaagccggccgccgtctgacctcgctttgctgcaagctggctgcgatcttcagcgtg
gagcagctgctgcatcacctgcagcaggttctggaaacgcacgaggtcaactggaaacac
gtcttggtctttgtctccaccctgctggtttacgaccagttggcccagcccagcctcagc
gagttgttgtgccacctgctgagctcggcgttcagaggctacgatctggagaagctgatc
accgccttcctgctggcccggcagggggcgctagagggcgccggcgtgtttccatcctac
actgactggttcaagatgtcgtttggcggacgctccggtttccacgccggcagtaagaag
tctctggtgttcctgctgaagttcctctctgacctcgtgccctttgaacctcctcagtac
ttaaaggttcatattcttcaccctccatttgtgcctccaaaacaccgcagcctcctgatg
gagtacgtcacgctggcgaagacccggctggccgacctgcaggagtcggtggaggacatg
ggtttgtatgaagatgtttctgctgccggtgcttcacttcagagccaggctgcgcaggac
gtggagaaagctgtgtgtctgtttgagagcagcggcaggatccctgcaacagtcatggag
gccagcattttccggaggccgtactttctaaccaggttccttcctgcgttgctgaagccc
agagcggtgagaaccttcagtgtgtttgtcagagcggtgagaacctttggtgtgttgagc
agatttttctcgtccttccagcttcctctcgaagccgatgctcagatgaacttcattgaa
gctctgaaacaagcagagaagatcccagctgcccagtattcccagtatgtggagtcctgt
cagaagcgaagacagcagagcggaagccctcagcgccccggagtcccgctggccgttctg
caggagcaactgcaggaattcaccgaactgctggcagcaggacgggacccagagtcgttg
gcccagctgtccaggatttctcacaccctgagtgtcgtgtgtcccggttctgatgacccg
gttggaccggccgccgcccccttgctgcccgagctcctcctgaaggtaaacctggttctg
gttctggaccatgttgggtctgcggttctgaagcgtttgtgttgtgatcttcaggtggct
gatttaattctgcaaagtttctgtcagagtctgctggtcgcttccagaggaaatcctccc
aacagacagagtttgtggggcagcaggttcgtctgcgtgctgctcgataaccggcagctt
ctctccagtgtaatccacagactgaaggatctgtttaaccgacaggcagcttctctgaaa
ccggctcacatcctgggcctggcagccttcatcgtccacctgcaggcggctcagccgggt
ccggcccagccgggtccggtttcggtagaagaggctctgggttcggccgtgttgagcggc
agtcggagcagcatgctgttctctgtcaggctggctgtggctgctgtgtcctatggactc
tgcagaggacagtctgcgtctccacagcgactgcaggactttgtccccaggagcctttat
aaaaagctcctgttcctggtcccaaggctgttccctgaggccaggatacgtccagaggga
caggggggagacggtccaacaggcggccatcttggggacggtctgtctctgctgtggagc
ttcactgatggaaccagctggacgaagacggtgctgcatctgtggagacacgctgccttc
cagcagctgcagcaactgcagctgtaccagttgtgtttttcagagtggctgcatgaagag
ctgagagtccagagaaactcagatgttttgtcggacgcagagcggcaggagtaccagcag
tgggcctgctgggagctttatctgccccggccagaggagcagggaggctgtggtggcgac
cccagggtgctctgctcccgtctgctgaccgccgtcatggagccgccacccagtagggag
atgaacctggaaaacctggacttttctccaggatcgtctggaactggaacctgtttgccg
gacctgctgtccagattacaggagctggtctacgaggcagaggtcggtgaactctcgggt
cgccgggggcatctgggggacttcctgctccgggtcgtgtctgagaaatgctccgcctcc
tctggcagcatctcctccaggctcagcctgcagagaaccatggaggcctggaacagggtg
ctcctgacactgccacccgcgatgttcttcaaaataaaggctgaagcagggcggagcatt
gtagactgtagccagctgctgcagcacatcacacagcttcagaggaaggcgtgtcctcca
gccggcgtgctgccctgcgcggtgacagtacatctcttgaagggcctgctctttgctgtg
ggacagtgtggacgtccagcagcagaagtggaccgtgtctggtccttgatgagcacctcc
tgtcctctcctcctcatctctgcagtgcgttggtggcagcagatttctccggttctggtt
tcactctggattcgcctccaggatgcagaaccttttccagagcagctgcagcttctctca
gcctgccgactctgggcctgcagtctgagagcaggtccggttctggtccagatccctcca
ggtccggttctggtccaagccgccagcctgcatggctccttcagaggcggggcggaaccc
cagcagaacttcagagaggttctggacggactgagagaggctgagaaccagcaggttctg
gtttctctgctctttcttttcgtgacggacttcctgtcagaacttctggatcctcaggag
aaaaattctggaaggtccaaatggttatgctcagaacttctggcggttctggtgaactca
gctgattggctgctgctcttcaggtccaacgaactggacccggaaccggacccagtcacc
ctgacggtctcggatgattgcagccggttgatgccctgggcagtctgcagtttgctgcag
cagcaaagcgccgccttccaccagagggcgctgcgttgccccgggttcctccacagcgcc
accctgtggtacctggcggtgctgcggctcttcctggacggagaggcgccggcctcggcg
cgccaggtggaaccgacccgggttctggaccgcaccaagcagtttgtcctgagtttgatc
cggcaggcgccggcagcggccctgagctgcagccagtggagacagttggagactcgctgt
gcggacctggacccagaactggctgcaactctttcaattcacctggaccatcctagggtg
ggcttcctctag
DBGET
integrated database retrieval system
