Xanthomonas medicagonis: AB3X07_00850
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Entry
AB3X07_00850 CDS
T10867
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AB3X07_00850 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xmd03400
]
AB3X07_00850 (recB)
Enzymes [BR:
xmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AB3X07_00850 (recB)
DNA repair and recombination proteins [BR:
xmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AB3X07_00850 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
nSTAND_NTPase5
AAA_11
Motif
Other DBs
NCBI-ProteinID:
XEB09767
LinkDB
All DBs
Position
178889..182746
Genome browser
AA seq
1285 aa
AA seq
DB search
MNGSPADDPYLTLPLHGVRLIEASAGTGKTFTLATLFTRLVVERRLRIGQILAVTFTEAA
TQELRRRIRERLALAATLVPDPTLPVGAASAATDTPNALSPTETADAPSRQNPPPQQAPD
AALTRAILAAHLAASDETPTALRRRLQQAVEDIDLAAIFTIHGFCARVLREHALESGQTF
AAPELLANDRELLAEVAADLWRQRAADPAMAEDLVALWPGGPQALAGDLRELVRHPRLLP
AVATTADDPAALLQAAHDAANALAAAFHAHGVACFEAIMAALDAGALSKVSYKPEWLTAL
WQWFAAFAEAPAAGLPPHPKLVKLTAAELVAGTNKKFAGSTPTSPLSHAIDTYLAALARV
EEWRGRRRIRLLHALRDDASARLALLKRQRRVQTYDDLVDGVAQALQGAQGAALARRLRA
QYAIALVDEFQDTDARQWAIFSQVFGAAAAHAGGEHGTPSDEDALAPSGEAPARLLALIG
DPKQAIYGFRGGDVQTYLAAAATATPAPPLAHNFRSRPAVLAAIEALYARAGHAQAFLTD
GIAFHPVQPGGTRRDDDLQRHGATAPALTVWRAPPPPLPDKGKPKPWSAGRARALCTAAC
VAAIRGWLADGRAGTATVGGRPVQAGDIAVLVRSHGEATAIQQALGAVGIPAVAAGRRSL
FATDEALEVLTLLQALLDPGDDSRLRAALATVLIGEDAAAIAALEHEGDRHRRWQQQALD
WRERWQRGGPLALLGDLGAAHAHRLLALADGERRLTNYLQLAEALQEADTRALGAHGLVD
WLARRIANADDGDETQQLRLESDARRVQIVTLHKSKGLEYPLVFLPYVGIGRSERGAGRH
CAVHAPPLGRQLHWNTSKWNGGADDPAWSAAEAAWKQEQRAEDARLLYVGLTRAEHALWI
ASGAFHQHERSALAAMLAEPDALQAAAGEAIVIDTTPPPANLPRLPPAEDVQVPPARAPQ
RRIAPEWWVYSFTQLANADAGAAADPMASATVVGGGGNDEPSAREAAGGAPDTDTETFDR
RFAGNRFGVAMHDVFERCDFAAWRAWRPGQPAPDGQRAAIVEALQRGGYAQDELEDGIAM
LTALVGHTLTVALPEGSRLAAVPAAQRRNEMEFHFAMRPTRVDALLALLHRFGVVGERQA
FGARQRLEGLMTGLIDLTYQHDGRWYVLDYKSNRLPGYDADAMARAMAHSEYELQALIYT
VALHRWLRFRLGETYDYARDFGGVRYLFCRGLDATRDPSPGVHAWRFDPDLVEAVDALFA
GAPEPLSPRERGWGEGPSAHGGPTP
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctcccccgccgacgatccctacctgaccttgccgctgcacggcgtgcgcctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccacgctgttcacccggctg
gtggtcgagcgccggctacgcatcggccagatcctggcggtcaccttcaccgaggccgcc
acccaggaactgcgccgccgcatccgcgaacgcctggccctggccgccacgctggtgccc
gacccgaccctccctgtaggagcggcttcagccgcgacagacaccccgaacgccctgtcg
cccaccgaaaccgccgacgcgccatcacggcagaacccgcccccacagcaagcaccagac
gccgccctcacccgcgccatcctcgccgcgcacctggccgccagcgacgaaacacccacc
gccctgcgccgccgcctgcagcaggcggtggaggacatcgacctcgccgccatcttcacc
atccatggtttctgcgcgcgcgtgctgcgcgaacatgcgctggaaagcggccagaccttc
gccgcgcccgaactgctggccaacgaccgcgaactgctggccgaagtcgccgccgacctg
tggcgccagcgcgccgccgacccggcgatggccgaggacctggtcgcgctgtggccgggc
gggccgcaggcattggccggcgacctgcgcgaactggtgcggcatccgcggctgctgccg
gccgtcgccaccaccgccgacgatcccgccgcgctgctgcaggccgcgcacgacgccgcc
aacgccttggcggccgcgttccatgcgcatggcgtcgcctgcttcgaggccatcatggcc
gcgctcgacgcgggcgcgctcagcaaggtcagctacaagcccgagtggctgacggcgttg
tggcagtggttcgccgccttcgccgaggcgccggccgccggcctgccgccgcatcccaag
ctggtcaagctgaccgccgcggaactggtcgccggcaccaacaagaagttcgccggcagc
accccgacctcgccgctgagccacgcgatcgacacctatctggccgccctggcccgcgtc
gaggaatggcgcggccggcgccgcatccgcctgctgcacgcgctgcgcgacgacgccagc
gcccgcctggccctgcttaagcgccagcgccgcgtgcagacctacgacgacctggtcgac
ggcgtggcgcaggcgctgcagggcgcgcagggcgcggccttggcgcggcgcctgcgcgcg
cagtatgcgatcgcgctggtggacgaattccaggacaccgatgcgcggcaatgggcgatc
ttctcgcaggtgttcggcgccgctgcggcgcacgccggcggcgagcacggtacgccgtcc
gacgaggacgcccttgctccgtccggcgaggcgccggcgcgcctgctggcgctgatcggc
gatcccaagcaggccatctacggcttccgcggcggcgacgtgcagacctacctggccgcg
gccgccaccgccacgccggcgccgccgctggcgcacaacttccgctcgcgtcccgcggtg
ctggcggcgatcgaggcgttgtacgcgcgcgccggccatgcgcaggcgttcctgaccgac
ggcatcgccttccacccggtgcagccgggcggcacccgccgcgacgatgatctgcagcgc
catggcgccaccgcgccggcgctgaccgtctggcgcgcgccgcccccgccgttgccggac
aagggcaagcccaagccctggagcgccggccgcgcgcgcgcgctgtgcaccgccgcctgc
gtcgccgccattcgcggttggctggccgatggccgcgccggtaccgccaccgtcggcggg
cgtccggtgcaggccggcgacatcgcggtgctggtacgcagccacggcgaggccaccgcc
atccagcaggcgctgggcgcggtcggcattcccgcggtggccgccggccggcgcagcctg
ttcgccaccgacgaggcgctggaggtgctgaccctgttgcaggcgctgctcgacccgggc
gacgacagccgcctgcgcgcggcgctggcgacggtactgatcggcgaggacgccgccgcg
atcgccgcgctggaacacgagggcgaccgtcaccgccgctggcagcagcaggcgctggac
tggcgcgagcgctggcagcgtggcggcccgctggcgctgctcggcgacctcggcgccgcg
cacgcgcaccgcctgctggcgctggccgatggcgagcgccgcctgaccaactacctgcaa
ctggccgaggcgctgcaggaagccgacacccgcgcgctcggcgcgcacgggctggtggac
tggctggcgcggcgcatcgccaatgccgacgacggcgacgagacccagcaactgcgcctg
gaatcggatgcgcgccgggtgcagatcgtgaccctgcacaagagcaagggcctggagtat
ccactggtgttcctgccctacgtcggcatcggccgcagcgagcgcggcgccggccgccat
tgcgccgtgcacgcgccgccgctcggccgccagttgcactggaatacctcgaagtggaac
ggcggcgccgacgacccggcctggagcgccgccgaagcggcgtggaaacaggaacagcgc
gccgaggacgcgcgcctgctctacgtcggcctgacccgtgccgagcacgcgctgtggatc
gccagcggcgccttccaccagcacgagcgcagcgcgctggcggccatgctcgccgagccg
gatgcgctgcaggccgcggccggcgaggcgatcgtgatcgacaccacgccgcctccggcc
aacctgccgcggctgccgccggccgaggacgtgcaggtgccgccggcacgcgcgccgcag
cggcgcatcgcgccggagtggtgggtgtacagcttcacccaactggccaacgccgatgcc
ggcgccgcggccgatccgatggccagcgccaccgtggtcggcggcggcggcaacgacgag
ccgtcggcgcgcgaggcggcgggcggggcgccggacacggacacggagacgttcgatcgc
cgtttcgccggcaaccgcttcggcgtggcgatgcacgacgtgttcgaacgctgcgacttc
gccgcctggcgcgcgtggcgccccggccagccggcgcctgacgggcaacgcgcggccatc
gtcgaagcgctgcaacgcggcggctacgcccaggacgaactggaggacggcatcgccatg
ctcaccgccctggtcggccacaccctcaccgtcgccttgccagaaggcagtcgcctggcg
gccgtgccggccgcgcagcgccgcaacgaaatggaattccacttcgcgatgcggcccacc
cgcgtcgacgcgctgctggcgctgctgcaccgattcggcgtggtcggcgaacgccaggcc
ttcggcgcgcgccagcgcctggaagggctgatgaccggcctgatcgacctcacctaccag
cacgacggacgctggtacgtgctcgactacaaatccaaccgtctgcccggctacgacgcc
gacgcgatggcgcgcgcgatggcgcacagcgagtacgaactgcaggcgctgatctacacc
gtggcgctgcaccgctggctgcgcttccgcctgggcgaaacctacgattacgcccgcgat
ttcggcggcgtgcgctacctgttctgccgcggcctggacgctacccgcgatccctcgccg
ggcgtgcacgcctggcgcttcgacccggacctggtcgaagccgtcgacgccctgttcgcc
ggcgcccctgagcccctctccccgcgggagaggggttggggtgagggtccgtccgctcac
ggaggccccactccatga
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