Xanthomonas medicagonis: AB3X07_01125
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Entry
AB3X07_01125 CDS
T10867
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB3X07_01125 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xmd03400
]
AB3X07_01125 (ligD)
Enzymes [BR:
xmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB3X07_01125 (ligD)
DNA repair and recombination proteins [BR:
xmd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB3X07_01125 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
XEB09813
LinkDB
All DBs
Position
complement(250173..252731)
Genome browser
AA seq
852 aa
AA seq
DB search
MSLAEYRRKRSFDKTREPEPGKALPQGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYAGFEGEIPKGEYGGGHVAQFDHGVWTTAGDPEAQLAK
GHLRFELFGSKLRGGWHLVRSGKPARQPQWLLFKDDDAFAGDVEADDLLADVTAPPPEDQ
KRAGSGKANKRKAQTTVALPRRARRTDWAKRAKALPKARKAAAPAGPFQAQLAKLGDAPP
QGEHWLHEIKWDGYRIQATIAQGVVRLWSRNAIEWTDKIPEIRDAIAALRLESAALDGEL
IAGKGTKEDFNLLQAVLSGERQGALALALFDLLHIDGIDIADAPLAERKALLQELVDGAG
PHLAFSSHIVGDGEAAFRLAGDQHFEGIISKRADRGYHGGRSEDWRKTKHLASDEFAVVG
YTAPKGSRSGFGSLLLAKPDPQHGWLYVGRVGSGFSETVLREVAALIGKAGGKTATAHVP
TTETDLRAATWFAPRFVVEVFYRGIGGQQLLRQASLKAVRRDKDIADLRDPDGAPAGGKP
AKQAMPAKRRGAAAAPADKTGARTPPALSSPGKRIFADIGATKQDVWDYYTAVMDHLLPE
VAGRPLSIVRCPNGAERPCFFQKHHTAGLELVSSVRLKEEAGNNAYYLVADDPAGLLELV
QFNALEFHPWGSYAATPDSANRVIFDLDPGPDVPFAEVKQAAKDIRRLLAQLELESFLRV
SGGKGLHVVVPLNPGCDWELTKRFAHGFADALAQSEPQRFLATATKRLRNKRIFVDYLRN
GRGATAVASYSLRARPGAPVAMPLAWSDLPKLHRADAFTMRDVPATLKRRRKDPWAGLDT
LKQNLARWAEAE
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggccgagtaccgccgcaagcgcagcttcgacaagaccagggagccggagccg
ggcaaggcgctgccccagggacagcgcccgatcttcgtggtgcaactgcaccacgccagc
cgccggcactacgacttccggctgcaggtcggcgatgcgctgaagagctgggcggtgccc
aagggccccagctacgaccccaaggtcaagcgcatggcggtggaagtggaggaccatccg
gtcgactatgccggcttcgagggcgagatccccaagggcgaatacggcggcggccacgtc
gcccagttcgaccacggcgtgtggaccaccgccggcgatcccgaggcgcaactggccaag
ggccacctgcgcttcgaactgttcggcagcaagctcaggggcggctggcacctggtgcgc
tccggcaagccggcgcggcagccgcaatggctgctgttcaaggacgacgacgcgttcgcc
ggcgacgtggaagccgacgacctgctcgccgacgtgaccgcgccgccgccggaggaccag
aagcgcgccggaagcggcaaggcgaacaagcgcaaggcgcagaccaccgtggccttgccg
cggcgcgcgcgcaggaccgattgggccaagcgcgccaaggccctgcccaaggcgcgcaag
gccgccgcgccggccgggccgttccaggcgcaactggcgaagctgggcgatgcgccgccg
cagggcgaacactggctccacgagatcaagtgggacggttaccgtatccaggcgaccatc
gcccagggcgtcgtgcgcctgtggtcgcgcaatgcgatcgagtggaccgacaagatcccg
gagatccgcgacgccatcgccgcactgaggctggagtcggccgcgctggatggcgaactg
atcgccggcaagggcacgaaggaggatttcaacctgctgcaggccgtgctgtccggggaa
cgccagggcgcgctcgcgctggcgctgttcgacctgctgcacatcgacggcatcgacatc
gccgatgcgccgctggccgagcgcaaggccctgctgcaggaactggtggacggcgccggc
ccgcacctggccttcagttcgcacatcgtcggcgatggcgaggcggcattccggctcgcc
ggcgaccagcacttcgagggcatcatctccaagcgcgccgatcgcggctatcacggcggg
cgcagcgaggactggcgcaagaccaagcacctggcctcggacgaattcgccgtggtcggc
tacaccgcgcccaagggaagccgctcgggcttcggctcgctgctgctggccaagcccgat
ccgcagcacggctggctgtacgtcggccgcgtgggttccggcttctccgagaccgtgctg
cgcgaggtcgccgcgctgatcggcaaggccggcggcaagaccgcgaccgcgcacgtcccc
accaccgagaccgatctgcgcgcggcgacctggttcgcgccgcgcttcgtggtcgaggtc
ttctaccgcggcatcggcgggcaacagttgctgcgccaggcctcgctgaaggcggtgcgg
cgcgacaaggacatcgccgacctgcgcgatccggacggcgcgccggcgggcggtaagccc
gccaagcaggccatgccagccaagcgccgcggcgccgcggcggcccccgccgacaagacc
ggcgcgcgcacgccgccggcgctgtccagccccggcaaacgcatcttcgccgacatcggc
gccaccaagcaggatgtctgggactactacaccgcggtcatggaccacctgttgccggag
gtcgccggccggccgctgtcgatcgtccgctgtcccaacggcgccgaacgcccgtgcttt
ttccagaagcaccacaccgccggcctggagctggtgtcgtcggtgcggctgaaggaggag
gccggcaacaacgcgtattacctggtggccgatgatcccgccgggctgctggaactggtg
cagttcaatgcgctggaattccatccctggggctcctacgccgccacgcccgattcggcg
aatcgggtgatattcgatctggatccgggcccggacgtgcccttcgccgaggtcaagcag
gcggcgaaggacatccgcagattgctcgcgcaactggaactggagtcgttcctgcgcgtc
tccggcggcaagggcctgcatgtcgtggtgccgctcaatcccggctgcgactgggaactg
accaagcgcttcgcgcacggcttcgccgatgcgctggcgcagtccgagccgcagcggttc
ctggctacggcgaccaagcgcctgcgcaacaagcggatcttcgtcgactacctgcgcaat
ggccgcggcgccaccgcggtcgcctcgtactcgctgcgcgcgcgccccggtgcgccggtg
gcgatgccgctggcctggagcgatctgcccaagctgcaccgcgccgatgcgttcacgatg
cgcgacgtgccggccacgctgaagcggcggcgcaaggatccgtgggccggcctcgacacg
ctcaagcagaacctcgcgcgctgggccgaagccgagtaa
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