Xanthomonas medicagonis: AB3X07_01760
Help
Entry
AB3X07_01760 CDS
T10867
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
xmd Xanthomonas medicagonis
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xmd03016
]
AB3X07_01760
Enzymes [BR:
xmd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AB3X07_01760
Transfer RNA biogenesis [BR:
xmd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AB3X07_01760
Prokaryotic type
tRNA splicing ligases
AB3X07_01760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Gam
Motif
Other DBs
NCBI-ProteinID:
XEB09930
LinkDB
All DBs
Position
complement(397207..398427)
Genome browser
AA seq
406 aa
AA seq
DB search
MSMQNYELLHAEGSATPIKGWVRGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRAADLPDNLAQLRSSIERSVPVGNGRGG
EHRKLPDSIATRIAQSGLVDRLETIKARHRRIRTDKLDCQIGTLGGGNHFIEVCLDESDA
VWVMLHSGSRGTGNLIGSYFIEQAREQLAHRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARENREAMMARVLAEMRHRLPKFQLEKLAVNCHHNYVQKETHAGEELLVTRKGAV
SARAGELGIIPGSMGAKSFIVRGLGNGDSFHSCSHGAGRVMSRTAARQQITLAQHREATA
HVECRKDAAVIDESPAAYKSIDAVMAAQSDLVEVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgcagaactacgaattgctgcacgccgaaggcagcgccacgccgatcaagggc
tgggtgcgcggcgtgccgctggaagcgcaggcccacgagcagttgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggcggtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggcgcgatcatcccggcggcggtcggcgtggac
atcggctgcggcatggccgcggtgcgcaccacgctgcgcgcggccgacctgcccgacaac
ctggcgcagctgcgctccagcatcgagcgcagcgtgccggtcggcaacggccgcggcggc
gagcaccgtaagctgcccgacagcatcgccacgcgcatcgcgcagtcggggctggtggat
cgcctggagacgatcaaggccaggcaccgccggatccgcaccgacaagctggactgccag
atcggcacgctcggcggcggcaaccacttcatcgaagtgtgcctggacgagagcgacgcg
gtgtgggtgatgctgcacagcggttcccgcggcaccggcaacctgatcggcagctacttc
atcgaacaggcgcgcgagcaactggcgcaccgtgtgctcggcttccacctgccggacaag
gatctggccttcttcatggaaggcgagccgctgttcgacgactacgtcgaggcggtgtcg
tgggcgcaggattacgcacgcgagaaccgcgaggcgatgatggcgcgggtgctggcggaa
atgcgtcaccgcttgccgaagttccagttggagaagctggcggtgaactgccaccacaac
tacgtgcagaaggagacgcacgccggcgaggaactgctggtgacccgcaagggcgcggtc
agcgcgcgcgccggagagctcggcatcattcccggcagcatgggcgcgaagagcttcatc
gtgcgcgggctgggcaacggtgacagcttccacagctgcagccatggcgccggccgggtg
atgagccggaccgcggcgcgccagcagatcacgctggcgcagcaccgcgaagccaccgcg
cacgtggaatgccgcaaggatgcggcggtgatcgacgagtcgccggcggcgtacaagtcg
atcgacgcggtgatggcggcgcaaagcgacctggtggaagtggtgcacaccctgcgccag
gtgctgtgcgtgaagggctga
DBGET
integrated database retrieval system
