Xanthomonas medicagonis: AB3X07_03150
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Entry
AB3X07_03150 CDS
T10867
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB3X07_03150 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xmd03019
]
AB3X07_03150 (rhlB)
Enzymes [BR:
xmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB3X07_03150 (rhlB)
Messenger RNA biogenesis [BR:
xmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB3X07_03150 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhlB
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XEB10186
LinkDB
All DBs
Position
721041..722834
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AA seq
597 aa
AA seq
DB search
MSDKPLTDVTFSAFELQPALLAGLEGAGFTRCTPIQALTLPVALPGRDVAGQAQTGTGKT
LAFLVTVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITAARVRQRIYFPS
DEEKLTLLLGLLSRSEGARTMVFVNTKAFVERVARSLERNGYRVGVLSGDVPQKKRETLL
NRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMSLPDIEAYIEQKIPVEPVTAELLVALPRTPRAVVEGEAAEADADGDESIGDIF
REARAQREADEQRRGGGSGRGKPGGGRSGPGGRGEARGADGKPRRPRTPRPAEAGATAGA
VAETAAAGSVANETVAAAAVAAPKPRPPRPAADGAPAVEGERPPRKRRRRRGGRPLEGAE
GAAASVPTEAPAKPVQVVATPVKAARQGDRAAAPAAAANDSFLTRLGRKLRSLVSSS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatgtgactttttccgcgttcgaactgcaaccggcgctg
ctggccgggctcgaaggcgccggtttcacccgctgcaccccgatccaggcgctgaccctg
ccggtggccctgccgggccgcgacgtggccggccaggcccagaccggcaccggcaagacc
ctggcgttcctggtgacggtgatgaaccgcctgctcagccgcccggcgctggccgaccgc
aagccggaggatccgcgcgcgctgatcctggccccgacccgcgaactggcgatccagatc
cacaaggacgcggtgaagttcggtgccgacctcggcctgcgcttcgcgctggtctacggc
ggcgtggactacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
acccccggccgcctgatcgactacgtcaagcagcacaaggtggtgtcgctgcacgcctgc
gagatctgcgtgctcgacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcggcgcatgcccgagcgcggcacccggcagaccctgctgttctcggcc
accctcagccaccgcgtgctggagctggcctacgaacatatgaacgagccggaaaagctc
gtggtcgagaccgagagcatcaccgccgcgcgcgtgcgccagcgcatctacttcccctcc
gacgaggagaagctgaccctgctgctgggcctgctgtcgcgcagcgagggcgcgcgcacc
atggtgttcgtcaataccaaggcgttcgtcgagcgcgtggcgcgctcgctggagcgcaac
ggctaccgggtcggcgtgctgtccggcgacgtgccgcagaagaagcgcgagaccctgctc
aaccgcttccagaaggggcagctggagatcctggtggccaccgacgtggccgcgcgcggc
ctgcacatcgacggggtcaagtacgtctacaactacgacctgccgttcgacgccgaggac
tacgtgcaccgtatcggccgtaccgcgcggttgggcgaggagggcgacgcgatcagcttc
gcctgcgagcgctacgcgatgagcctgccggacatcgaggcctacatcgaacagaagatc
ccggtcgagccggtcaccgccgagttgctggtggcgttgccgcgcaccccgcgtgcggtg
gtcgaaggcgaggcggccgaggccgacgcggacggcgacgagagcatcggcgacatcttc
cgcgaggcgcgtgcgcagcgcgaagccgacgagcagcgccgcggcggcggcagcggtcgc
ggcaagcccggtggcggccgcagcgggcctggcggccgcggcgaggcgcgcggtgccgac
ggcaagccgcggcgtccgcgcacgccgcgtccggccgaggccggtgcaacggcaggtgcg
gtggcggagacggcggcggccggttcggtcgccaacgagacggtggccgcggcagcggtc
gcggcgcccaagccgaggccgccgcgtccggccgccgacggcgcgccggcggtggaaggc
gagcgtccgccgcgcaagcgccggcgtcgtcgtggtggccgcccgctggaaggcgcggag
ggcgctgccgcgtcggtgccgaccgaggcgccggccaagccggtgcaggtcgtggccacg
ccggtcaaggctgcgcgccagggcgaccgcgccgcggcaccggccgcggccgccaacgat
tcgttcctgacccggctcggccgcaagctgcgctcgctggtctccagctcctga
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