Xanthomonas medicagonis: AB3X07_08295
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Entry
AB3X07_08295 CDS
T10867
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03018
RNA degradation
Brite
Enzymes [BR:
xmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AB3X07_08295
Messenger RNA biogenesis [BR:
xmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AB3X07_08295
Ribosome biogenesis [BR:
xmd03009
]
Prokaryotic type
rRNA helicases
AB3X07_08295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XEB11141
LinkDB
All DBs
Position
1952978..1954969
Genome browser
AA seq
663 aa
AA seq
DB search
MSQDTPAPLLFADLGLSPAVMKAVADVGYESPSPIQAATIPALLTGRDLLGQAQTGTGKT
AAFALPILSRLDFNQRKPQALVLAPTRELAIQVAEAFHRYAAAIPGFQVLPVYGGQPYVQ
QLSALKRGVHVVVGTPGRVIDHLDRGTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PDSRQVALFSATMPPAIKRIAQTYLNDPAEVIIASKTTTSANIRQRYWAVSGLHKLDALT
RILEVEPFDAMIIFARTKAGTDELAQKLQARGLAAAAINGDIQQSQRERVIQQLKDGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPREKGML
RAIERATRQPIEEMQLPSVDAVNDQRVTRFMEKISETIASGGIDMYRDLLQKFEAEKNVP
MVEVAAALARLLQGDTPLLLAPERARPPQGERYERPAGERRDRADRGERAERPKFDREAR
PPRRDEGERAPRPPRPAPAGHGPDFDYQRDVGSFEAPRRDKAPKAPRGEPEVGMETYRIE
VGHQHGVKPANIVGAIANEAGLESKYIGRIDIHDDHSVLDLPADMPRELLTHLKKVWVSG
QQLQMRKLDGDDAGAAPFKPKFARGAGKPGGRPNAAGPRPSGAATRIADRAGERPPRKGP
PKR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagatacccccgcgccgctgctgttcgcagatctcggcctctcgcctgctgtg
atgaaagccgtcgccgacgtcggctacgagtcgccgtcgccgatccaggccgccaccatt
cccgcgctgctgaccggccgcgacctgctcggccaggcccagaccggcaccggcaagacc
gccgcgttcgcgctgccgatcctatcgcggctggacttcaaccagcgcaagccgcaggcg
ctggtgctggcgccgacccgcgaactggcgatccaggtggccgaggcgttccatcgctat
gccgcggcgatcccgggcttccaggtgctgccggtgtacggcggccagccctacgtgcag
cagctgtcggcgctcaagcgcggcgtgcacgtggtggtgggcaccccgggccgggtgatc
gaccacctcgaccgcggcaccctggacctgtccgagctgaagacgctggtgctcgacgag
gccgacgagatgctgcgcatgggtttcatcgacgacgtcgaggcggtgcttaagaagttg
ccggactcgcgccaggtggcgctgttctcggcgaccatgccgccggcgatcaagcgcatc
gcgcagacctatctgaacgacccggccgaggtcatcatcgcctccaagaccaccacgtcg
gcgaacatccgccaacgctactgggcggtcagcgggctgcacaagctcgatgcgctgacc
cggatcctggaagtggagccgttcgacgcgatgatcatcttcgcgcgcaccaaggccggt
accgacgagctggcgcagaagctgcaggcgcgcggtctggccgccgcggcgatcaacggc
gacatccagcagtcgcagcgcgagcgggtgatccagcagctcaaggacggcaagctcgac
atcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcggatcagccacgtg
ctgaactacgacattccctacgacaccgaaagctacgtgcaccgcatcggccgcaccggc
cgcgccggccgcagcggcgaggcgatcctgttcgtcagcccgcgcgagaagggcatgctg
cgcgcgatcgagcgcgccacccggcagccgatcgaagagatgcagctgccgagcgtggac
gcggtcaacgaccagcgcgtgacccgcttcatggaaaagatcagcgagaccatcgccagc
ggcggtatcgatatgtaccgcgatctgctgcagaagttcgaggcggagaagaacgtgccg
atggtcgaggtggccgcggcgctggcgcgcctgctgcagggcgacacgccgctgctgctg
gcgccggagcgcgcgcgtccgccgcagggcgagcgctacgagcggcccgctggcgaacgc
cgcgaccgtgccgaccgcggcgagcgcgcggaacgcccgaagttcgaccgcgaagcacgt
ccgccgcgccgcgacgagggcgagcgcgcgccgcgtccgccgcgtcccgcgccggccggg
cacggccccgacttcgactaccagcgcgacgtcggcagcttcgaggcgccgcgccgcgac
aaggcgcccaaggcgccgcgcggcgagccggaagtgggcatggagacctaccgcatcgaa
gtcggccatcagcacggggtcaagccggccaacatcgtcggcgcgatcgccaacgaggcc
ggcctggagagcaagtacatcggccgcatcgacatccacgacgaccattcggtgctggac
ctgccggcggacatgccgcgcgaactgctgacccacctgaagaaggtctgggtctccggc
cagcaactgcagatgcgcaagctcgacggcgacgatgccggcgccgcgccgttcaagccg
aagttcgcgcgtggcgcgggcaagcccggcggccgcccgaacgcggccggtccgcgcccg
tccggcgccgccacccgcatcgccgaccgcgccggcgaacgcccgccgcgcaaggggccg
ccgaagcgctga
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