Xanthomonas medicagonis: AB3X07_09935
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Entry
AB3X07_09935 CDS
T10867
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03018
RNA degradation
Brite
Enzymes [BR:
xmd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB3X07_09935
Messenger RNA biogenesis [BR:
xmd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB3X07_09935
Ribosome biogenesis [BR:
xmd03009
]
Prokaryotic type
rRNA processing factors
AB3X07_09935
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XEB11450
LinkDB
All DBs
Position
complement(2327955..2331440)
Genome browser
AA seq
1161 aa
AA seq
DB search
MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEY
GGERHGFLPLKEISRDYFQAGVDHNKATIRELLREGQEVVVQVDKEERGNKGAALTTFIS
LAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVGRDAEELQ
WDLDYLLQVWKSIAEAALAKPAPFLIYQESRLIIRALRDYLRADIGEILVDTPEMYGDAQ
EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRLPSGGSIVVDQTEALTAV
DVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASNKHQREVENR
LQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESMSLS
IIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRRALSEIEKRHDAPIVIVADEQLHTPH
YEVTRLRENELGEESAKPSYQRNTPRKLPVHALTKAQLNIPAPAVTNVKHSQPAPVREVV
ETPEPAAAPVQVQAPAPAPVAAPATGVVGWLKRIFGAGDAPAPTPVASEPAQRQRANDGN
RNRNDRGDRNARRDGNRNGGQGGNAARGNGGNGGNARRDERRPGNGGGNPQGQQNGAAKP
PRNEQPQQAKPQQQPAQQPKPPKQQQPQNPARQPKPQQEPAQAAAQGDRPQRQPRQDEAA
GKPVAAPAAAVAQDATTIAAAAVVGAAVSPANEAPASEAIAATPAAPQPQVTQPGIDERE
SAAETAQAVPAGENGEADDANGEAGGRRRRGRRGGRRRRRGNGEAGTGSEGAAFDDNELE
AGDSDGDGDGETASAPSRSQPEFDFDDDAAPGEASAAKPQQAPRERREKREPRPERPAAT
DAPTAAAAAVVPQAADDSAPAQAAPAATAAVVAVAPTVAAPASVEDAPAETTATQAADAH
ASSASAPVAETHAAPATPTATASVVAVAAPAESAPPKTVEDALQPAPTPIVERPVAVATT
PLAAGTETVAAPVEAAAPLPATPVSEPRQDAAPTSPAAQEEPSKPAYMPVQTTLLDALPE
EPAVAPATPASAPVATAPASNVAASDDADTAAAAPADTADKGLFDAPPADAPVAVAQHQP
PRSAHDDGESDDDKEHKERAG
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgctgatcaacgccacgcaggcggaagaactgcgtgtggccatcgtggac
ggccagaccctgtacgacatcgacatcgagcagccgtccaaggaacagaagaagtccaac
atctacaagggccgcatcacccggctcgaaccctcgctcgaagccgccttcgtcgaatac
ggcggcgagcgccacggcttcctgccgctgaaggaaatctcccgcgattacttccaggcc
ggcgtcgaccacaacaaggcgacgatccgcgaactgctgcgcgagggccaggaagtcgtg
gtccaggtggacaaggaagaacgcggcaacaagggcgccgcgctgaccacgttcatctcc
ctggccggccgctacatggtgctgatgccgaactcgcccagcgccggcggcgtctcgcgc
cggatcgagggcgaggaccgcgccgcgctgaaggaagcgctggacaagctgaacatcccc
gacgacatgggcgtgatcatccgcaccgccggcgtcggccgcgatgccgaagaactgcag
tgggacctggactacctgctgcaggtgtggaagtcgatcgccgaggccgccctggccaag
ccggcgccgttcctgatctaccaggaatcgcggctgatcatccgcgccctgcgcgactac
ctgcgcgccgacatcggcgagatcctggtcgacacccccgagatgtacggcgatgcccag
gagttcatgcagcaggtgatgccgcagagcctgcgcaagctcaagcactacaccgacgac
atcccgctgttcaaccgcttccagatcgaatcgcagatcgaggcggcctacgagcgcagc
gtgcgcctgccctccggcggctcgatcgtggtcgaccagaccgaagcgctgaccgcggtg
gacgtcaactcctcgcgcgcgaccaagggcagcgacatcgaggacaccgcgttccagacc
aacctggaggccgccgaagaggtggcgcgccagctgcgcctgcgcgacctgggcggcctg
gtggtcatcgacttcatcgacatggcctccaacaagcaccagcgcgaggtcgagaaccgc
ctgcagaacgcgctcaagtacgaccgtgcgcgggtgcagatcggccgcatctcgcgcttc
ggcctgctcgagatgagccgccagcgcctgcgtccgtcgctgggcgagtccagccagatc
gtgtgcccgcgttgcgacggccatggccgcatgcgcagcgtcgagtcgatgtcgctgtcg
atcatccgcgtcgccgaagagcatgcgatgaaggagaacaccggacaggtgctggtgcag
gccccggtggagatcgccaactacctgctcaacgagaagcgccgcgcgctcagcgagatc
gagaagcgccacgacgcgccgatcgtcatcgtcgccgacgagcaactgcacaccccgcac
tacgaagtgacccgcctgcgcgagaacgagctgggcgaggaaagcgccaagcccagctac
cagcgcaacaccccgcgcaagctgccggtgcacgcgctgaccaaggcgcaactgaacatc
ccggcgccggcggtgaccaatgtgaagcactcgcagccggccccggtgcgcgaggtggtc
gagaccccggaaccggcggcggcccccgtgcaggtgcaggccccggcgcccgcgccggtc
gcggcgccggccaccggcgtggtcggctggctgaagcggatcttcggtgccggcgacgcc
ccggcgccgacccccgtcgcgagcgagccggcgcagcgccagcgcgccaacgacggcaat
cgcaaccgcaacgaccgcggcgaccgcaacgcgcggcgcgacggcaaccgcaacggcggc
cagggcggcaatgccgcgcgcggtaacggcggcaatggcggcaacgcgcggcgcgacgag
cgccgtccgggcaatggcggcggcaacccgcagggccagcagaacggcgcggccaagccg
ccgcgcaacgagcagccgcagcaggccaagccgcagcagcagcccgcgcagcaacccaag
ccgcccaagcagcagcaaccgcagaacccggcgcgccagcccaagccgcagcaggaaccg
gcgcaggccgccgcccagggcgaccggccgcagcgccagccgcgccaggacgaggccgca
ggcaagcccgtcgcggccccggccgccgcggtcgcgcaggacgccaccacgatcgccgcg
gccgccgtggtcggcgccgccgtgtccccggccaacgaggcgccggccagcgaggccatc
gccgccaccccggctgcgccgcagccgcaggtgacgcaaccgggcatcgacgaacgcgag
agcgccgcggagaccgcgcaggcggtcccggccggcgagaacggcgaggccgacgacgcc
aacggcgaggccggcggccgccgccggcgcggtcgtcgcggcggtcgccgccgtcgccgc
ggcaatggcgaagccggcaccggcagcgaaggcgcggcgttcgacgacaacgaactggag
gccggcgacagcgatggcgacggcgacggcgaaaccgcctcggcaccgagccgcagccag
cccgagttcgatttcgacgacgatgccgccccgggcgaagccagcgcggccaagccgcag
caggcgccacgggaaaggcgcgagaagcgcgagccgcggcccgagcgtcccgccgccacc
gatgcgcccaccgccgccgctgcggccgtcgtgccgcaggctgcggacgacagcgcgcca
gcgcaggccgccccggcggccaccgctgccgtggtagcggtcgcgccgaccgttgccgca
ccggcttcggtggaggacgcgccagccgaaacgacggcgacgcaggcggccgacgctcat
gcgtcctccgcctcggcaccggtcgcggagacccatgcagcgcctgcaacgcccaccgcc
acggcatcggtcgtcgctgtcgcggcacccgccgagtcggcgccgccgaagacggtggag
gacgccctgcagccggcgccgacgccgatcgtggagcggcccgtcgcggtcgccacgacg
ccgctggccgccggaacggaaaccgtcgccgcaccggtggaggcagcggcaccgctgccc
gcaacgccggtcagcgaaccgcggcaggatgccgcgccgacgtcgcccgccgcccaggaa
gagcccagcaagccggcctacatgccggtgcagaccacgctgctggacgccctccccgag
gaaccggccgtcgccccggccacgccggcgtccgcgccggtcgccacagccccggcctcg
aacgtcgctgccagcgacgatgcggacaccgcggcagcggcgcctgccgacaccgcggac
aagggcctgttcgacgccccgccggcggatgcaccggtcgcggtcgcccagcaccagccg
ccgcgcagcgcgcatgacgacggcgagagcgacgacgacaaggagcacaaggaacgcgcc
ggctga
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