Xanthomonas medicagonis: AB3X07_19890
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Entry
AB3X07_19890 CDS
T10867
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
xmd Xanthomonas medicagonis
Pathway
xmd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
xmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AB3X07_19890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xmd03400
]
AB3X07_19890
Enzymes [BR:
xmd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AB3X07_19890
DNA repair and recombination proteins [BR:
xmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AB3X07_19890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF7373_C
DUF2026
Motif
Other DBs
NCBI-ProteinID:
XEB09043
LinkDB
All DBs
Position
complement(4694420..4695868)
Genome browser
AA seq
482 aa
AA seq
DB search
MFQAEVHPPWSLQAWRDAARAAWCAQAAPEHIRWDGDAQGGLLAGADVTGLAATVPPPRV
SAEFLALAGAVLCHRDPQRHALLYRLLWRIAGGERALLQRVTDADVHRAQQWAQAVRRDS
HKMKAFVRFREVPGEQEAYIAWFEPEHHIVDRIAPFFARRFAGMRWAILTPYRSVQWDGA
ALRFGAGAQRADAPADDAQDALWRTYYANIFNPARLNPTMMRQEMPQKYWKHLPETQLLP
TLIREAGQRVHAMAERAPEPVRRRIPAPAPAPVVADDDSLDALRAAARDCRRCPLWQPAT
QTVFGDGPPNAAVMVVGEQPGDEEDLSGRPFVGPAGRLFDRALQELGVDRAGLYVTNAVK
HFRFEQRGKARLHRNPERAHVEACRMWLAGELARVRPRIVLCLGATAARAVLGSGFALMA
QRGQWQALDDGTRALATVHPSWVLRQRGEADAASAYRGFVDDLRTLAQAPDTPRAVVAPV
PR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgttccaggctgaggtccatccgccctggagcctgcaggcctggcgcgacgcggcgcgc
gcggcgtggtgcgcacaagcggcgccggagcacatccgctgggacggcgatgcgcagggc
gggttgctggcgggcgcggatgtgaccgggttggcggcgacggtaccgccgccgcgcgtg
tcggccgagttcctggcgctggccggcgcggtgctgtgccatcgcgatccgcagcggcat
gccttgctgtaccggctgctatggcgcatcgccggcggcgagcgcgcgctgctgcagcgg
gtcaccgatgccgacgtgcaccgcgcgcagcagtgggcgcaggcggtgcgccgcgacagc
cacaagatgaaggcgttcgtgcgcttccgcgaagtgccgggcgagcaggaggcctacatc
gcctggttcgagccggagcaccacatcgtcgatcgcatcgcgccgttcttcgcgcggcgc
ttcgccggcatgcgctgggcgatcctcaccccgtaccgcagcgtgcaatgggacggtgcg
gcgctgcggttcggcgccggcgcgcagcgcgccgatgcgccggccgacgatgcgcaggac
gcgctgtggcggacctactacgccaacatcttcaacccggcgcggctcaacccgacgatg
atgcgccaggagatgccgcagaagtactggaagcacctgccggagacgcaactgttgccg
accctgatccgcgaggccggccagcgcgtgcacgcgatggccgagcgtgcgccggaaccg
gtgcggcggcgcattcccgcgccggccccggcgccggtcgtggccgacgacgacagcctg
gatgcgctgcgcgcggcggcgcgcgattgccgccgctgtccgctgtggcagccggccacc
cagaccgtgttcggcgacggcccgccgaacgccgcggtgatggtggtgggcgagcaaccc
ggcgacgaggaagacctgagcgggcgcccgttcgtcggcccggccgggcgcctgttcgac
cgcgcgctgcaggagctgggcgtcgaccgtgccggcctgtacgtcaccaacgcggtcaag
catttccgcttcgagcagcgcggcaaggcgcggctgcaccgcaatcccgagcgtgcccat
gtcgaagcctgccggatgtggctggccggcgaactggcacgggtgcgtccgcggatcgtg
ctgtgcctgggcgcgaccgcggcgcgcgcggtgctggggagcggcttcgcgctgatggcc
cagcgcgggcagtggcaggcgctggacgatggcacccgtgccctggccaccgtgcatccg
tcgtgggtgctgcgccagcggggcgaggccgacgcggccagcgcctatcgcggcttcgtc
gacgacctgcggacgctggcgcaggctccggacacgccgcgcgcggtggttgcgccggtc
ccgcgctga
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