Xenorhabdus nematophila ATCC 19061: XNC1_0004
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Entry
XNC1_0004 CDS
T01274
Symbol
gyrB
Name
(GenBank) DNA gyrase, subunit B (type II topoisomerase)
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xne03032
]
XNC1_0004 (gyrB)
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_0004 (gyrB)
Enzymes [BR:
xne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
XNC1_0004 (gyrB)
DNA replication proteins [BR:
xne03032
]
Prokaryotic type
DNA Topoisomerases
XNC1_0004 (gyrB)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XNC1_0004 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
DUF6865
TPR_7
Motif
Other DBs
NCBI-ProteinID:
CBJ88097
UniProt:
D3VG07
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All DBs
Position
3795..6209
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AA seq
804 aa
AA seq
DB search
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCDKIV
VTIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELTIRRDGKVHEQTYHHGVPQSPLNIVGDTEQTGTTVRFWPSMDTFKINT
EFEYDILAKRLRELSFLNSGVSIRLVDKRTNAEDLFHYKGGIKAFVEFLSRNKNPIHPNV
FYFSTEKDGIGVEISMQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYNKKSKVSATGDDAREGLIAVISVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVEY
LLENPNDAKTVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKVKKG
KQEQYIKDDDAMEAYQMSIALDGAALYTNPHAPGLKGEALENLVTEFNTTQKLIHRMERL
YPLALLNSLIYHPKLTEDALNDQTKVEEWVSALTIRLNDKEQHGSTYSYHIHENRERQVF
EPVLCIRTHGVDTNYSLDFDFIHGGEYRRITKLGDLIGNLIDEDAYIERGERRQAISSFE
HALEWLSKESRRGLSIQRYKGLGEMNPEQLWETTMNPETRRMMRVTVKDAIATDLLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatacatatgactcctcaagtatcaaggtattaaaagggctggatgctgtccgt
aaacgtccaggcatgtatatcggtgataccgatgatggtactggtctacaccacatggtc
ttcgaggttgttgacaacgctatcgacgaagccctcgcaggtcattgtgacaaaatagtt
gtcaccatccatgcagataactcagtgtctgtacaggatgatggccgcggtattcctacc
ggcatacacgaagaagaaggggtttcagcggcggaagttatcatgactgtgctgcatgcg
ggggggaaattcgatgacaactcctataaagtttccggcggcctgcatggcgtaggggtt
tctgttgttaacgccttatcggaaaaactggaactgactatccgtcgtgacggtaaagtc
cacgaacagacttaccatcatggtgttccacagtctccgctgaacattgtcggtgatacc
gagcagacaggaaccacggttcgtttctggccaagcatggatacgttcaagattaacact
gaattcgaatacgatattctggctaagcgcctgcgtgaattatcattcctgaattccggt
gtttctattcgtttagttgataaacgcaccaatgccgaagatctcttccactataaaggc
ggtatcaaagcgtttgttgagttcctcagccgcaataaaaacccgattcacccaaatgtt
ttttatttctccacagaaaaagacggtattggtgttgaaatttccatgcaatggaatgat
ggttttcaggaaaacatttactgcttcaccaacaatattcctcagcgcgatggcggaacg
cacttagtgggtttccgtaccgcgatgacccgaaccctcaatagctacatggataaagag
ggctacaacaaaaaatccaaagtcagcgccaccggtgatgatgcccgtgaaggtttgatt
gcagttatttccgttaaagtacctgatcctaaattctcttcccagacgaaagacaaactg
gtttcttccgaagtgaaaacggcggtcgaaacgctgatgaatgagaagctggtggaatac
ctgctggaaaacccgaacgacgccaaaacggttgtcggcaaaatcattgatgcggctcgc
gcccgtgaagctgcacgtaaagctcgtgaaatgacccgtcgtaaaggtgcactggatctg
gccggtttgccgggcaaactggctgactgtcaggagcgtgacccggctttgtccgaactc
tacctggtggagggtgattctgcgggtggttcagcaaaacaggggcgtaaccgtaaaaat
caggcgatcctgccactgaaaggtaagatcctgaacgttgagaaagcccgttttgacaaa
atgctctcttcacaggaagtcgcaaccttgatcacggcgctgggctgcggtattggccgt
gatgagtacaacccggacaagctgcgttatcacagcatcatcatcatgaccgatgccgat
gttgatggttctcacatccgtaccctgctgctgaccttcttctatcgccagatgccggaa
atcattgagcggggctatgtttatatcgctcagccaccactgtacaaagtgaagaaaggc
aaacaagagcaatacatcaaagatgacgatgcaatggaagcgtaccagatgtccatcgca
ttggatggcgcggcgttgtacaccaacccgcatgctccggggctgaaaggtgaagcattg
gaaaatctggtgactgagttcaacacaacccagaaactcatccatcgtatggagcgcctg
tatccgctggctctgctgaacagtctgatttaccatcctaaactgaccgaagatgcactg
aatgatcagacaaaagtggaagaatgggtaagcgcgctgactattcgtttgaatgacaaa
gaacagcatggcagcacttacagctatcacatccatgagaaccgtgaacgccaggttttc
gagccagttctgtgcattcgtacacatggtgttgataccaactacagtctggatttcgat
ttcatccacggtggcgaataccgccgcatcaccaaactgggtgatttgatcggaaacctg
attgatgaagatgcatatattgaacgtggtgaacgccgtcaggcaataagcagctttgag
catgcgctggagtggctgagcaaagagtcacgccgtggtctttccatccaacgttataaa
ggtctgggggaaatgaacccagagcagttgtgggaaacaaccatgaacccggaaacgcgt
cgtatgatgcgtgtcaccgtgaaagatgcaattgccactgacctgctgttcacaaccctg
atgggtgatgcagttgaacctcgtcgggcatttattgaagaaaatgctctgaaagcagcg
aatattgatatttaa
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