Xenorhabdus nematophila ATCC 19061: XNC1_0343
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Entry
XNC1_0343 CDS
T01274
Symbol
rpoA
Name
(GenBank) RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
XNC1_0343 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xne03021
]
XNC1_0343 (rpoA)
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_0343 (rpoA)
Enzymes [BR:
xne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
XNC1_0343 (rpoA)
Transcription machinery [BR:
xne03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
XNC1_0343 (rpoA)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
XNC1_0343 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
DUF4843
Motif
Other DBs
NCBI-ProteinID:
CBJ88425
UniProt:
D3VHT6
LinkDB
All DBs
Position
279039..280028
Genome browser
AA seq
329 aa
AA seq
DB search
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGVQEDILEILLNLKGLAVKVQGKDEVILTVNKSGIGPVTAADIIHDGD
VEIVKPQHVICHLTDESASISMRIKVQRGRGYVPASARIHSEEDERPIGRLLVDACYSPV
ERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQP
EVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagggttctgtgacagagtttctaaaaccgcgcctggtagatatcgagcaagtcagt
tcgacgcacgccaaggtgacccttgagccattagagcgtggctttggccatactcttggc
aacgcactgcgccgtattctgctttcgtctatgccgggttgtgcggtgactgaggttgag
attgatggtgtactgcatgagtacagcaccaaagaaggtgtacaggaagatatcctggag
attctcctcaatctgaaagggctggcggtgaaagttcagggtaaagatgaagttatcctt
accgtgaataaatctggcattggccctgtgactgcagccgacatcatccatgatggtgat
gtcgaaatcgtcaagccgcagcacgtaatctgccatctaactgacgaaagcgcgtccatt
agcatgcgcattaaagttcagcgcggtcgtggttatgtgccggcttctgcccgaattcat
tcggaagaagatgagcgccctatcggtcgtttgttagtagatgcttgctatagcccagta
gagcgtatcgcctacaatgttgaagcagctcgtgtagaacagcgtactgatctggataag
ctggttatcgagatggagactaacggcacaatcgatcctgaagaagcgattcgccgtgca
gctaccattctggctgaacaactagaagcttttgttgatttacgtgatgtacgtcaacca
gaagttaaagaagagaagccagaatttgatccgatcctgctgcgccctgttgacgatctg
gaattgactgtccgctctgctaactgccttaaagcagaagctatccactacatcggtgat
ctggtacagcgtactgaggttgagttacttaagacacctaacttgggtaaaaaatctctt
actgagattaaagacgtactggcttcacgtggactttctctgggcatgcgtctggaaaac
tggccaccagcaagtattgctgatgaataa
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