Xenorhabdus nematophila ATCC 19061: XNC1_0380
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Entry
XNC1_0380 CDS
T01274
Symbol
rhlB
Name
(GenBank) putative ATP-dependent helicase with nucleoside triP hydrolase domain
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC1_0380 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xne03019
]
XNC1_0380 (rhlB)
Enzymes [BR:
xne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XNC1_0380 (rhlB)
Messenger RNA biogenesis [BR:
xne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XNC1_0380 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ88457
UniProt:
D3VHW8
LinkDB
All DBs
Position
complement(314684..315967)
Genome browser
AA seq
427 aa
AA seq
DB search
MSKTHLTEKKFSDFALHPKVLGALDKKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAGKERKINQPRALIMAPTRELAVQIYSDAKELAEVTGLKMGLAYG
GDGYDKQLKVLESGVDIVIGTTGRLIDYAKQGHIHLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRIPAATERLNLLFSATLSYRVRELAFEQMNNPEYVEVEPLQKTGHRIREELFYPSN
EEKMRLLQTLLEEEWPDRCIIFANTKHRCEDIWTHLAADGHRVGLLTGDVAQKKRLRILE
EFSLGNLDILVATDVAARGLHIPSVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYVLNLPSIEEYIQHQIPVSKYNSDALLKDLPVPKRRNRTRPGGHPRRINMPRRGNPT
RNRKHPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttgacagaaaagaagttttccgacttcgcattgcaccccaaagtc
ctaggagcccttgataaaaaagggttttccaactgcacgcctatacaggcgctaacattg
ccttttactgtcgaaggccgagatgttgcggggcaagcacaaaccggaacaggcaagacg
ctggcatttttggcgtctacttttcattacttattaactcatcctgcggggaaagagcgt
aaaattaatcagccaagagcactgattatggctccaacccgtgaattagctgtccaaata
tattctgacgcaaaagaactggcggaagtcactggattgaaaatgggtcttgcctacggt
ggcgatggctatgataaacagcttaaggtgctggaatcaggtgttgatatcgttattggc
acaacaggtcgtttgatcgattatgcaaaacaaggccatattcatcttggtgcgattcaa
gttgtcgtacttgatgaagctgatcgcatgtacgatttaggctttatcaaagacattcgc
tggctgttccgccgtatcccggcagcaacagaaagactgaatttgcttttttctgcgacg
ctgtcttaccgggtgcgcgaactcgctttcgaacagatgaataaccctgaatatgtggaa
gttgaacccttgcagaaaacagggcaccgaattcgtgaagagctattttatccttccaat
gaagaaaaaatgcgtctgttacagaccttgctggaagaagaatggccggatcgttgcatc
atttttgccaataccaagcaccgctgtgaagatatctggactcatctggctgccgatggt
catcgcgttgggcttctgactggcgatgttgcccagaaaaagcgactgcgtattctcgaa
gaattcagtctgggtaatctggatattttggttgcgaccgatgtggctgcccgtggtctg
catattccatctgtgacgcatgtatttaattatgatctaccggatgactgtgaagattat
gttcaccggattggccggacaggacgcgccggagaaagcggtcactctatcagtctggca
tgcgaagaatatgtgttgaacttaccttctattgaagagtatatccagcaccagataccc
gtcagtaaatataatagtgatgcgttattaaaagatttacccgttcctaagcgccgtaat
cgtacacgtccagggggacacccacgccgtataaatatgccacgtcgtggaaatccaaca
cgcaaccgtaaacacccaagctga
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