Xenorhabdus nematophila ATCC 19061: XNC1_0511
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Entry
XNC1_0511 CDS
T01274
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC1_0511 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xne03019
]
XNC1_0511 (deaD)
03009 Ribosome biogenesis [BR:
xne03009
]
XNC1_0511 (deaD)
Enzymes [BR:
xne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XNC1_0511 (deaD)
Messenger RNA biogenesis [BR:
xne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XNC1_0511 (deaD)
Ribosome biogenesis [BR:
xne03009
]
Prokaryotic type
rRNA helicases
XNC1_0511 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
UvrD-helicase
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CBJ88585
UniProt:
D3VIN5
LinkDB
All DBs
Position
443395..445344
Genome browser
AA seq
649 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FTLPLLHNINAELKAPQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPDAELLGQRRLEKFAANVQQQLESSDLDQYRALLAKLGTDEELEME
TLAAALLKMAQGERPLILPPDPVRRPRREFNDRDDRRRNGNGFGDRDKSDRGDRGDRGDR
PRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPK
GMPGELLSHFTRTRILNKPLNMQLMGDAQPFERRERRGGGRNGNGNGGNGPRRDRDNAGN
GNNGGRRFNNERRGGGERGSFRGRNNDNFSGGAPRRRQSNDNGNSTSNV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcggcacctattctttct
gcactgggagacatgggctatgaaaagccttctcctattcaacaacaatgtattcctcac
ctgctgaacggtcgtgacgtgctgggcatggcacagacgggaagtggtaaaactgcggca
ttcaccttgccattactgcataacatcaatgctgaacttaaagctccacagatccttgtg
ttagcgcctacccgtgaactggcggtacaggttgctgaagcgtgttcagatttctctaaa
catatgcgcagtgtaaatgtcgttgcactctacggtgggcaacgttacgacgttcaatta
cgtgccctgcgtcagggaccacagattgtagtgggaaccccgggtcgtctgctggaccac
ctgaaacgtggaactttggatctgtccaacctgaaaggtctggtactggatgaagctgac
gaaatgctgcgcatgggctttatcgaagatgttgaaaacatcatgagccagatccctgct
gaacaccagacagctctgttctcagcaaccatgcctgaagcgattcgtcgtattacccgt
cgtttcatgaacgatccgcaggaagttcgtattcagagcagcgtgacaaaccgtcctgac
atcagccagagttactggtctgtttacggtgtgcgcaaaaacgaagcgctggtacgtttt
cttgaagcagaagattttgatgctgcgattattttcgtgcgtaccaaaaatgcaacgctg
gaagtagcagaagcgctggagcgtaacggttacaactctgcggcactgaatggtgacatg
aatcagaccctgcgtgagcagactcttgagcgtttgaaaaatggtcgtctggacattctg
attgcaacagatgttgctgctcgtggcctggatgttgagcgtatcagtctggttgttaac
tatgatatcccaatggatgcagagtcttatgtacaccgtattggtcgtaccggccgtgca
ggtcgtgcaggtcgtgctctgctgttcgttgaaaaccgtgaacgtcgtctgctgcgtaac
atcgaacgcactatgaagctgactatcccagaagttgaactgccggatgcagagctgctg
ggccagcgtcgtctggagaaattcgcagctaacgtccagcaacaactggaaagcagcgat
ttggatcagtaccgtgcactgttggctaagctgggcactgatgaagagctggagatggaa
acactggctgctgccctgctgaaaatggcacaaggtgagcgcccactgattctgccacct
gatccggttcgccgtcctcgccgtgaattcaacgaccgtgatgaccgtcgtcgtaacggc
aatggttttggcgatcgtgacaaaagcgacagaggtgaccgaggcgatagaggcgaccgt
cctcgtcgtgagcgtcgtgacgtgggtgatatggagctgtatcgcattgaagtgggccgt
gatgatggcgttgaagttcgtcacatcgtgggcgcaattgcaaacgaaggtgatatcagc
agccgttatatcggtaatatcaaactgtttgccactcactccacgattgagttgccaaaa
ggaatgccaggggaattattgtctcactttacccgcactcgcatcctgaacaagcctctg
aacatgcagttgatgggtgatgcacaaccatttgaacgtcgtgagcgtcgtggtggtggc
cgcaatggaaacggcaacggtggcaatggcccacgtcgtgatcgtgataatgctggcaat
ggcaataatggtggtcgtcgttttaataacgaacgtcgtggcggcggtgagcgtggttct
ttccgtggtcgcaacaacgataacttcagcggtggcgcaccacgtcgtcgtcaaagcaat
gataatggcaacagcactagcaacgtataa
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