Xenorhabdus nematophila ATCC 19061: XNC1_0746
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Entry
XNC1_0746 CDS
T01274
Symbol
sbcC
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_0746 (sbcC)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XNC1_0746 (sbcC)
Archaeal homologous recombinant proteins
XNC1_0746 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
SMC_N
DUF365
ABC_tran
cobW
Motif
Other DBs
NCBI-ProteinID:
CBJ88817
UniProt:
D3VK65
LinkDB
All DBs
Position
complement(642187..645867)
Genome browser
AA seq
1226 aa
AA seq
DB search
MKILSLRLKNINSLKGEWKIDFTTEPFASNGLFAITGSTGAGKTSLLDAICLALYHETPR
LKTISGSQNELMTRHTSECLAEVEFEVKGIVYRAFWSQRRARDQAGGKLQQPKGELALKE
DGKILADKLPEKKEKIAEITGLDFSRFTKSMLLSQGEFAAFLNAQDKDRADLLEELTGTE
IYGILSQEIYQRHKEAQSELNIQQAKASSIELLTPEQQQAYQNQQQQLIAEEIQLNQQIK
ALQAAEQWFSRRNELQQSLENNTSLLQQSELAIQEAQPQLQQLAVSEPAEKIRPLWEAQN
RSLHEKQRLTEQRTKTENERQQQLELLRPTEQQLTQLEKTRGEHQQYHSQQEKLILEQIM
PLDHKIDIQAKDLLALGKEISGQNREYSDLHSQYQAAQKQTETLHKEQKERESYYEQHPY
YQNLDSKLPEWKQLFSRQKERQTKINQLIQNSQQITTEINRTTEYLNTLDAELTKQRKLS
QALHSNLVAAESQLAALQKKHPLEQLQNHLVNYQEKLGSQNKLEILLPQIQQLQISINDD
QTQLLRSQELVKSLPDQIIALTQQLAEKQQHYDDLSNRIRLEQRIASLEKERAQLKEGES
CPLCGSTHHPLISEYQNIALPESEERLKNLRQQIEQLQENRTTLQQKQQTQQQHSEQLQQ
KVVQLSARLAELVKQWHHHCQQLQATELPMDTELVNHFISQRQSDNQQHLTQQEALLQAE
KACQSAEKSVASNREQYSACEKNIELEKFKQVSAQKQLAEKTAEIQQIESEYSATEQQLN
TELTTTPFTLPAYQEAENWLFQREQELKNYHESRERWQQLQKEQAALQSKLNELEKQKNR
LATQIHILNEQQQQKKQLQEKTCQERKDLFGEQSVTDVRQGLQQKSHELEAAYKQAVLHQ
QELQNKMNQLTGAASEIEKSCIAAEANYKLAASHFQAGLERQNFSDQSSFENALLEPERR
EKLQQLQGKLGQQKLQAQTKHHESAVALQRHTETQPQLLESRDPPQLSAELTSAETKLKY
NNQQQGEVRTVLNSDTNRRQQQQTLLAQIALSQQNYDDWSYLNNLIGSADGAKFRRFAQG
LTLDHLVHLANIRLEKLHKRYYLQRKDDGSLELQVVDTWQADAIRDTKTLSGGESFLVSL
ALALALSDLVSNKTQIESLFLDEGFGTLDAETLDIALDALDHLNASGKTIGIISHVEALK
ERIPVQIKVEKKNGLGCSQLAPEFRI
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattcttagcttacggctgaaaaatatcaattcactgaaaggtgaatggaaaatt
gactttacgacagaaccttttgccagcaacgggctatttgccattacaggttcaactggc
gcaggcaaaacgtccttgctggatgccatttgtctcgctctgtatcatgaaacaccacgg
ctcaagactatttccggatcacagaatgaattaatgacccgccatacctctgaatgcctt
gcagaagtagagttcgaagtcaaaggtatcgtttatcgggcattctggagccagcgacgt
gctcgtgatcaggcgggtggcaagctccaacaacccaaaggagaactggcactcaaagaa
gatggaaaaatattagccgacaagctcccagagaaaaaagagaaaatcgccgaaatcacc
ggtctggactttagccgttttaccaaatccatgctcttgtcacagggggagtttgccgca
ttcctgaatgctcaggataaagatcgggcagacctactggaagagttaacaggcacagaa
atttacggcattctgtcccaggaaatttatcagcggcataaagaggcacagtcagagctg
aatattcaacaggccaaagcgtcttccattgaattactcacaccagaacagcaacaagcg
taccaaaaccagcaacaacagcttattgcagaagaaatccagctcaaccagcaaattaaa
gccttacaagctgctgagcagtggttttccagacgcaatgaactccagcaatcgttggaa
aacaatacatcacttttgcagcaatctgagcttgcaatacaagaggcacaacctcagtta
caacagcttgcagtcagcgaacccgcagaaaaaatccgtccgttgtgggaagcacaaaat
cgcagccttcatgaaaaacagcgactcactgaacagcgcacaaaaacagagaatgaacgc
cagcagcagcttgaactacttcgtccaaccgaacaacagcttacacaattggaaaaaacg
cggggagaacaccagcaatatcacagtcagcaggaaaagctcatcttagagcaaattatg
ccgctcgatcataagattgatattcaggcgaaagatcttctggcacttgggaaagaaatt
tcagggcaaaaccgcgaatattctgatcttcattcccaataccaagctgcgcagaaacag
acagagacgttgcacaaagaacagaaagaacgggaatcttactacgagcaacatccctat
taccaaaatttggacagtaaactgcctgaatggaagcaattatttagccgccagaaagag
cggcaaacaaaaatcaatcaactgatacaaaatagccagcaaattaccacggagatcaac
cgcacaaccgagtatttaaatacgttagatgcggaactcaccaagcaaagaaaattgagc
caggcactgcacagcaatcttgttgccgctgaaagtcaacttgcggccttacagaaaaaa
cacccgttggagcaattacagaatcatttagtaaattatcaggaaaagctgggatcacag
aataagctggagatcttattgcctcagattcaacagctacagatctcgattaatgacgat
caaacccaattactacgatcacaggaattggtaaaatctttacctgatcagataatcgct
cttactcagcaattagcggaaaagcagcaacactatgacgacctaagtaatcgcattcgt
ttggagcagaggattgccagtctggaaaaagaacgggcgcaattaaaagaaggggaatcc
tgccctctctgcggttcaactcaccatcctctaatcagcgaatatcaaaatatcgctctg
ccagaatcagaagaacgactgaagaacctgcgccaacagattgagcaactacaagaaaat
cgcacaaccctacaacagaaacaacaaacccagcagcaacatagcgaacagctacaacaa
aaggttgtacaattgagcgctagattggccgaattggttaaacaatggcaccatcattgc
caacaattacaggccacagaattgccgatggatacagaattggttaaccattttatcagc
cagaggcaatctgataatcaacaacacctgacgcaacaggaagcccttttacaggcagaa
aaagcctgccaatccgcagaaaaatcagtggcttccaaccgtgaacaatacagtgcatgt
gaaaagaatattgaactggaaaaattcaagcaggtttcagcccagaaacaattggcagaa
aaaacggcagaaatccaacaaatagaaagcgaatattctgcaacggaacaacaactcaat
accgaattaacgacaacaccttttaccttgcctgcttatcaagaagccgaaaattggctg
tttcagcgtgaacaagaattaaaaaattaccatgaatcgcgcgaaagatggcaacaacta
cagaaagaacaggcagccttacaaagcaagctgaatgagctggaaaaacaaaaaaataga
ttagcaacccagattcatatcttgaatgagcaacaacagcagaaaaaacaattacaggaa
aaaacatgtcaggagcgcaaggacttatttggagaacaatctgttactgatgttcgtcaa
ggcttacaacaaaagtcccatgagctggaagctgcttacaagcaagccgtgctccaccag
caagagctgcaaaataaaatgaatcaactcactggcgctgccagtgaaattgaaaaaagt
tgtatcgcggccgaagcaaactacaaacttgctgccagccacttccaagcaggattggaa
cgacaaaatttttctgatcaatcatcttttgagaatgccttattagaacctgaacggcgg
gaaaaattacaacagttacaaggaaaacttggacaacaaaaattgcaggctcaaacaaag
catcatgaatcagcagtggcattacagcggcataccgagacgcaaccacaattacttgaa
tcacgtgatcctccgcaactttcagccgaattaaccagtgctgagactaagcttaaatac
aataaccaacaacaaggtgaagtcagaaccgtactgaacagcgatacaaaccgccgccag
caacaacagacattactggcacagattgccctctcacaacaaaactatgatgactggagt
tatctcaacaatctgattggttccgctgacggggctaaattccgccgttttgcccaagga
ctgacattggatcatctcgtacatctggcgaatatccggctggaaaaattacacaaacgc
tactacttgcagcgtaaagacgatggcagtctggaattacaggttgttgatacctggcaa
gcggatgccattcgggataccaaaacgctttccggcggggaaagttttcttgtcagcctt
gcgcttgcgctcgctttgtctgatttggtgagtaataaaacacaaatagaatccctgttc
cttgatgaaggttttggcacacttgatgctgaaaccctcgatatcgctttagatgctttg
gatcacctcaatgcgtcaggaaaaaccattgggataatcagtcatgtagaagcattgaaa
gagcgcattccggttcagataaaagtagaaaaaaagaacgggctgggatgcagtcaacta
gcacctgaatttaggatttaa
DBGET
integrated database retrieval system
