Xenorhabdus nematophila ATCC 19061: XNC1_1460
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Entry
XNC1_1460 CDS
T01274
Symbol
rhlE
Name
(GenBank) putative ATP-dependent RNA helicase with P-loop hydrolase domain
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC1_1460 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xne03019
]
XNC1_1460 (rhlE)
Enzymes [BR:
xne01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XNC1_1460 (rhlE)
Messenger RNA biogenesis [BR:
xne03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XNC1_1460 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
HI1480
AAA_22
UvrD-helicase
DsrH
Motif
Other DBs
NCBI-ProteinID:
CBJ89523
UniProt:
D3VB84
LinkDB
All DBs
Position
1337513..1339009
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AA seq
498 aa
AA seq
DB search
MNFESLGLKADILRAVEEQGYAEPTPIQQQAIPVVLSGKDLLASAQTGTGKTAGFTLPIL
QRLSESPTQVKGRRPVRALILTPTRELAAQVGENVHNYSKYLKLRSFVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRILNKLPAK
RQNLLFSATFSDEIKNLANKLLNDPVSVEVARRNSASEQIAQSIHFVDKKRKGELLSYMI
GSQNWQQVLVFTRTKHGANKLAELLNKDGVTAAAIHGNKSQGARTRALADFKSGQIRALV
ATDIAARGLDIDQLPHVVNYELPNVAEDYVHRIGRTGRADATGQAISLVCVDEHKLLKDI
ERLLKREIPRIAIQGYEPDPSIKAEPIQNGRNDRGDGSRGSNSRENNARGNNSRSNSSRR
NSPGANSSHGNSPWGSGSRDKNSGGEHSQGRRNSGKPGHSKPEQANQKDDRSRNQDTRSR
QRRQKITTKTPNAVASGE
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgagtcactcggcttgaaggctgatattttgcgtgccgttgaagaacaaggt
tacgcggaacctacccctattcagcaacaggccattcctgttgtcctatccggtaaagat
cttctggctagtgcccagacagggacggggaaaacagcggggtttactttgcctattttg
caacggttaagtgaatccccaactcaggtaaaaggtcgccgtccggtcagggcactgatt
ttaacacctacccgggagctagccgcgcaggtgggtgaaaatgtacataattacagcaaa
tatctcaaattacgttcatttgttgtgtttggtggcgttagcattaatccgcaaatgatg
aaattgcgtggtggtgttgatattttggtggcgacacctgggcgtttgttggatctggaa
catcaaaatgcggtggatctttcgcacgttgaaattttgattttggatgaagctgaccgt
atgctggatatgggctttattcatgatattcgtcgaatattgaataagttaccagcaaaa
cgtcagaacctgctgttttctgccactttctctgatgaaatcaaaaatctcgccaataaa
ttgctgaatgatccggtgagtgtagaagtcgcacgccgtaactcagcttctgagcagatt
gctcagtcaatccactttgtagacaaaaaacgtaagggagaattactgtcttacatgata
ggcagtcagaactggcagcaggtattggtattcacccgtactaaacatggtgcaaataaa
ctggcggaactactcaataaagatggtgtgacggcggcggcaatccacggcaataaaagc
cagggtgcaagaacgcgcgcactggctgattttaaatccgggcaaattcgtgcgttggta
gcaacggatattgctgcccgtggattggatattgatcaactgccgcatgtggttaactat
gagctgccaaacgttgcagaagattatgttcatcgtatcggtcgtactgggcgtgcggat
gcaacggggcaagccatatcgctggtatgtgttgatgaacacaagctcctgaaagatatt
gaacggctgttgaagcgggaaattccacgtattgcgattcagggttatgaacctgatcct
tccattaaggcggagcctattcagaatggacgcaatgaccgcggtgatggatctcgcggt
agcaattctcgtgagaacaatgctcgtggtaataattctcgtagcaacagctcacgcaga
aacagccctggtgccaatagttctcatggaaacagtccttggggaagcggttcacgtgat
aaaaattcaggtggtgaacactcacaaggccggcgcaatagtggtaaaccgggtcattcc
aaacccgaacaggctaatcaaaaagatgatcgctcacgcaatcaggacacccgttcccgt
cagcgtcgtcaaaaaatcaccacgaaaacgccaaatgctgtagcttcgggagaataa
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