Xenorhabdus nematophila ATCC 19061: XNC1_2185
Help
Entry
XNC1_2185 CDS
T01274
Symbol
rnd
Name
(GenBank) RNase D, processes tRNA precursor
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xne03016
]
XNC1_2185 (rnd)
Enzymes [BR:
xne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
XNC1_2185 (rnd)
Transfer RNA biogenesis [BR:
xne03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XNC1_2185 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
CBJ90244
UniProt:
D3VFD0
LinkDB
All DBs
Position
2105234..2106373
Genome browser
AA seq
379 aa
AA seq
DB search
MLNCNYQLVTTDAQLQSVCEQAKKHARIALDTEFVRTRTYYPQLGLIQLFDGEQLSLIDP
LEISQWQPLKALLVDPDVLKLIHAGSEDLEVFGNSFQCLPTPMIDTQVLAAFIGHPISCG
FATLVAEYLHVELDKSESRTDWLARPLSRKQCEYAAADVYYLLPLADILLKKTEQAGYFD
AAKDESDLIAQRRKEIVVPECAYKDIGNAWQLRPKQLACLKKLAAWRLNQARERDLAVNF
VIREENLWQVARYMPTSLGELDALGLSGQEIRCHGRRLLAMVAESRNIPEEEYPAQVVNL
IDYPDYRKVFKEIKSLITQVSEPHLFNAELLASRRQINQLLYWHWKLKALGHQPELLRGW
RGELLDEPISEILANYSEQ
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaattgtaattatcagttggttactactgatgctcaattgcagtcagtttgtgag
caggcaaaaaaacatgcaagaattgcattagataccgaatttgtacgtacaaggacgtac
tatcctcaattaggtttaatacaactatttgatggtgaacagctttctttgattgatccc
ctcgaaatttcacaatggcaaccccttaaagcgttgttggttgatcctgacgtattgaaa
cttatccatgctggtagtgaagatctggaagtttttggcaatagcttccaatgtttgcca
acaccgatgattgatactcaggtattagctgcatttattggtcatcctatatcatgtggt
tttgcgacgttggttgctgaatatctgcatgtggaattggataagagtgaatcccgtaca
gattggttagcgcgtccgttgagcagaaaacaatgtgaatatgctgcggctgatgtttat
tacttattgccactcgccgatattttgttgaaaaaaaccgagcaggcaggatactttgat
gcggcaaaagatgaaagtgatttgattgcccagcgccgcaaagaaatagtcgttccggaa
tgtgcttataaagatattggtaacgcatggcagttgcgcccaaagcaattagcttgcttg
aaaaaattggcggcgtggcgattaaatcaggctcgggagcgtgatctggcggtgaatttt
gtcatccgtgaagaaaatttatggcaggttgcccgctatatgccgacttctctgggagaa
ttagatgctttggggctgagcgggcaggaaattcgttgtcatggtcgccgtttgttggcg
atggttgcggaaagtcgaaatattccggaagaagaatatccggctcaagtggtgaatttg
attgactatccggattatcgcaaagttttcaaagaaattaagtcattgatcactcaggta
agtgagcctcatcttttcaatgcagaattgctggcttctcgccggcagattaatcaactg
ctctattggcattggaaactaaaagcgttgggacaccaacctgagttgctcaggggctgg
cgtggtgagttgctggatgaacctatttctgaaatattggcaaactattctgaacaataa
DBGET
integrated database retrieval system
