Xenorhabdus nematophila ATCC 19061: XNC1_2404
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Entry
XNC1_2404 CDS
T01274
Symbol
rnb
Name
(GenBank) RNase II, mRNA degradation
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xne03016
]
XNC1_2404 (rnb)
Enzymes [BR:
xne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
XNC1_2404 (rnb)
Transfer RNA biogenesis [BR:
xne03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
XNC1_2404 (rnb)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
CBJ90463
UniProt:
D3VGM7
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All DBs
Position
2330757..2332700
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AA seq
647 aa
AA seq
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MFQNNPLLAQLKQQLHAQTTRVEGLVKGTEKGFGFLEVDGQKSYFIPPPHMKKVMHGDRI
TAAIHIDKEKEIAEPETLIEPFLTRFVGRIQKKENDNRLWIIPDHPLLKDTIPCRPANDV
THAFKNGDWAVAEMRRHPLKGDRGFHAEVTGYITESDDHYVPWWVTLTRHNLERQAPAMT
EDCQLDDGSIERIDLTSLDFVTIDSATTEDMDDALHIAKNDDGTLKLSIAIADPTAYINA
SSELDKIAYQRSFTNYLPGFNIPMLPRELSDDLCSLRPNVRRPALVCQVSVQEDGQLGDD
IQFFAAWVESKFKLVYDEVSDWLEGQDGWKPESEAVTTQISLLKEMCDRRNNWRQQYALV
FKERPDYRFILDEGGHVVDIVIEQRRSANRIVEEAMITANLCAAKILRDKLGFGIYNVHT
GFEFTQIEQVVEVLNENGIEADAEALVQLDGFCELRRELDKQPTQFLDSRIRRFQTFAEI
KTEPGPHFGLGFDAYATWTSPIRKYSDIVNHRLLKAIIQQTETEKPSEELCLQLTERRRA
NRMAERDVGDWLYARFLHPHAGTDKTFPAEVIDITRGGLRVRLVDNGAVAFVPGPFLHAV
RDELQCSQETGSVLIKGEVAYRLNDIIDVRIEEVRMETRNIVARPVG
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaaataatccgctgcttgcgcagctaaaacagcaacttcatgcacagaccacc
cgcgtagaaggtttagtcaaaggaactgaaaaaggctttggatttttagaagtcgatggc
caaaaaagttatttcattccacctccccatatgaagaaagtcatgcatggtgaccggatt
accgcggctatccatatagataaagaaaaggaaattgcggagcctgaaacgttaattgag
ccatttctgacccgttttgtaggaaggatccagaagaaagaaaacgacaaccgattatgg
attattcctgaccatccattattaaaggatacgatcccttgccgtcctgccaacgacgtt
acccatgcttttaaaaatggcgattgggctgtcgccgagatgcgccgccatcccttaaaa
ggtgatcgcgggttccatgcggaagtgaccggctatattaccgaaagcgatgaccattac
gttccttggtgggtaacactgactcgccataatctggaacgtcaggctcccgcaatgaca
gaagattgccagctggatgatggttcaatcgaacgcattgatcttacctctctcgatttt
gtgaccattgacagtgcaacaaccgaagatatggatgatgcactgcatattgccaaaaat
gatgatggcacactgaaactgtctattgctattgccgacccaacggcttatatcaacgct
agcagtgaactggataaaattgcctatcagcgcagtttcactaattacctgccgggcttt
aatatcccaatgctgccccgtgagttgtcagatgatttatgttcgctgcgcccgaatgtc
cgccgccctgctctggtttgtcaggtttctgttcaggaagatggtcaattaggggatgac
attcaattcttcgctgcttgggtagaatcgaaattcaaactagtttatgacgaagtctct
gattggctggaaggccaggatggctggaaacctgaatctgaagcggtgactacacagatc
tcgcttttgaaagaaatgtgtgatcgccggaataactggcgtcaacaatatgcgttggtt
ttcaaagaacgcccggattatcggtttattcttgatgaaggcgggcatgttgttgatatt
gttattgaacaacgccgttcagctaaccgcatcgttgaagaagccatgatcacagcaaat
ctgtgcgcagccaagattttgcgggataagttaggttttggtatttataacgtacatact
ggtttcgaatttactcagattgaacaagtggttgaagtgcttaacgagaacggtattgaa
gctgatgccgaagcactggtgcaattagacgggttctgtgaactgcgccgtgaactggat
aaacaaccaacacaattcttggatagccgcattcgccgtttccaaacatttgcagaaatt
aaaacagaacccggcccacattttggactcggctttgatgcttatgcgacttggacatcc
ccgattcgtaaatacagcgatatcgtcaaccatcgcctgttaaaagcgattatccagcaa
actgaaacagaaaaaccgtctgaagaactttgcctgcaattaaccgagcgtcgtcgcgca
aaccggatggcagaacgcgatgtgggcgactggctttatgcccggttccttcatccacat
gctggtacagataagacattccccgcagaagttattgatattacccgtggtggtctgcgt
gttcgtctggttgataatggtgcggttgctttcgttcccgggccattcctgcatgctgtc
cgcgatgagcttcagtgcagtcaggaaaccggttccgtgttgattaaaggcgaagttgct
taccgtttgaatgatattatcgatgttcgcattgaagaagtcagaatggaaacccgcaat
atcgtggctcgccctgtaggttaa
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