Xenorhabdus nematophila ATCC 19061: XNC1_2754
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Entry
XNC1_2754 CDS
T01274
Symbol
sbcB
Name
(GenBank) exonuclease I, 3'-> 5'-specific; deoxyribophosphodiesterase
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
XNC1_2754 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_2754 (sbcB)
Enzymes [BR:
xne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
XNC1_2754 (sbcB)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
XNC1_2754 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XNC1_2754 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XNC1_2754 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
DUF1122
Spt46
Motif
Other DBs
NCBI-ProteinID:
CBJ90808
UniProt:
D3VIG8
LinkDB
All DBs
Position
2726797..2728227
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AA seq
476 aa
AA seq
DB search
MNTSKEQQSFYFHDYETFGKHPALDRPAQFAGVRTDSDFNIIEEPLVVYCAPADDYLPDP
EAVMITGITPQQALTKGVNEVEFARQIHEVLSKPNTCILGYNNIRFDDEVSRNIFYRNFY
DPYAYSWQKGNSRWDLLDVLRACYALRPEGIIWPENDDGLPSFKLEHLTKANGIEHTHAH
DAMSDVYATIAMAKLVKKAQPRLFDYFFQLRNKQKIINQIDIPQMKPLVHVSGMFGALRS
NISLIAPLAWHPTNRNAVIMCDLAGDISPLLEPNVDELRKRLYTRRDELQPNQSPVPIKL
VHINKCPIIAPENTLRPEDAERVELDRNQCEYNLAILRNHPQIRERVVELFSSPEEFPES
DNVDAKLYSGFFGDADKTAMEIIRKTAPQNLPALDLTFQDERIKALLFRYRARNYPATLD
YDEQQRWLRHRQDILTQESISQYLATIEALFVEYQSDEEKCRQLKTLVEYAVQLAG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaccagtaaagaacaacaaagtttctactttcatgattatgaaacttttggtaag
caccctgctttagatcgccctgcacagtttgcaggtgtccgcactgacagcgatttcaat
atcattgaagagcctttagtcgtgtattgtgctcctgcggatgattatcttcctgatcct
gaagctgtcatgatcacaggaatcacaccacagcaggccttaacaaaaggggtcaatgaa
gtcgaatttgctcgccaaatccatgaagtactcagtaaacccaacacatgtattctcgga
tacaataacattcgttttgatgacgaagtcagccgcaatattttttaccgtaatttctac
gatccttacgcctatagctggcaaaaaggtaattcccgttgggatttacttgatgtattg
cgtgcctgctatgccttgcgtccggaaggcattatctggccggaaaatgatgatgggttg
cctagcttcaaacttgagcatctgacaaaagccaatggtattgagcatactcacgctcac
gatgcaatgtccgatgtttatgccactattgcaatggcaaaattagtgaagaaagcccag
cctcgtttgtttgattattttttccaattaaggaataaacaaaaaatcatcaatcaaatc
gatatcccacaaatgaagccactggttcatgtatcaggtatgtttggggctttacgtagc
aacattagccttattgcgcctttagcatggcatccgacaaatcgtaatgccgtgattatg
tgcgacctggcaggtgatatctctccgctgctggaacctaatgtagatgaattacgcaag
cgcctgtatacccggcgtgatgaattacagccaaatcaaagtccggtacccattaaatta
gtccatatcaataagtgcccaatcatcgcaccagaaaatacattgcgaccagaagacgca
gagcgagtcgaactggatcgcaaccaatgtgaatataatctggctattttgcgcaatcat
ccacaaatcagggaaagagtcgtagagttattctctagtccggaagaatttccagaatct
gataatgtcgatgctaagctatatagtggtttttttggtgatgccgataaaaccgcgatg
gagattatccgaaaaactgcgcctcagaatttacctgccttggatctcacgtttcaggat
gaacgcatcaaggcactgttgttccgctatcgcgccagaaactatccggcaacgctggat
tatgatgaacagcaacgctggttgcgtcatcgccaagatattttaactcaggaaagcatt
agccaataccttgcaacgattgaagcgctttttgttgaatatcaatctgatgaggaaaaa
tgtcgtcagttaaaaacattagttgaatatgctgttcaattagccggataa
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