Xenorhabdus nematophila ATCC 19061: XNC1_3850
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Entry
XNC1_3850 CDS
T01274
Symbol
truD
Name
(GenBank) putative hydrogenase subunit
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
xne03016
]
XNC1_3850 (truD)
Enzymes [BR:
xne01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
XNC1_3850 (truD)
Transfer RNA biogenesis [BR:
xne03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
XNC1_3850 (truD)
Prokaryotic type
XNC1_3850 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
CBJ91881
UniProt:
D3VBP2
LinkDB
All DBs
Position
complement(3706663..3707712)
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AA seq
349 aa
AA seq
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MILNQLHWLYGQPEATGIVKASPEDFIVREDLGFSPDGEGEHLMVHIRKTGCNTQFVADH
LARFAKIPARSVSYAGLKDRNAVTEQWFCLHLPGKEDPDLTAFQLEGCEILATSRQKRKL
RIGALKGNDFTLVLRAISDRQSVEKRLQRISQDGVPNYFGEQRFGRDGQNLVQAQRWAAN
EIQVKERNRRSFYLSASRSAMFNAIASTRIARDEHKQVKIGDALQLTGRGSWFVAEEAEL
DALQQRVMGGELQITAPLPGDKALGTQHQAIDFEEHCLLDYESFWALVKRERVESARRAI
LVKPLNLNWEWLNEQTVALRFFLPSGSFATSVVRELINQDHNHVADIAE
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgattctgaatcaattacactggctgtatggccaaccggaagcaacaggtattgttaaa
gcttcacccgaagattttattgttcgtgaagatttaggtttttctcctgatggagaaggc
gaacatttgatggtacatatccgtaagacgggatgtaatacccagtttgtggccgatcat
ttagcccgttttgctaaaattcctgcccgctctgtgagttatgcaggcttaaaagatcgc
aatgcagtaaccgagcagtggttttgtctacatttaccgggcaaggaagatccagattta
accgcattccagcttgaaggttgtgaaatactggcaacttcccgccagaaacgaaaactg
cggattggcgcgttgaaaggcaatgattttacactggtattaagagccatttctgatcga
caatcggtggaaaagcgcttgcagcgaatatcacaggacggtgtcccgaattattttggt
gaacagcgctttggacgtgacgggcaaaatctggttcaggcgcagcgctgggctgccaat
gaaattcaggtcaaagagcgcaatcgccgtagtttttatctgtctgccagccgtagtgcc
atgtttaatgccattgccagtacccgcattgcccgcgatgaacataaacaagtaaaaatt
ggtgatgctttgcagttaaccggacgcggtagctggtttgttgcggaagaggctgaattg
gatgcgctacagcagcgagtcatgggtggtgagttacagataacagcgcctttaccgggc
gacaaagcgttgggaacacagcatcaggctattgattttgaagaacattgcttactggat
tatgaatcattctgggcgttggtaaaacgcgagcgtgtagaaagtgcccgccgtgcaata
ctggtgaaaccgctgaacctgaactgggaatggttgaatgaacaaaccgttgccctccgg
ttcttcctgccatcgggtagctttgccaccagcgttgtcagagaacttattaatcaggat
cacaatcatgtggcagatattgcggagtaa
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