Xenorhabdus nematophila ATCC 19061: XNC1_3991
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Entry
XNC1_3991 CDS
T01274
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03030
DNA replication
xne03430
Mismatch repair
xne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XNC1_3991 (dnaE)
03430 Mismatch repair
XNC1_3991 (dnaE)
03440 Homologous recombination
XNC1_3991 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xne03032
]
XNC1_3991 (dnaE)
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_3991 (dnaE)
Enzymes [BR:
xne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XNC1_3991 (dnaE)
DNA replication proteins [BR:
xne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
XNC1_3991 (dnaE)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
XNC1_3991 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Arena_ncap_C
Motif
Other DBs
NCBI-ProteinID:
CBJ92016
UniProt:
D3VCI1
LinkDB
All DBs
Position
complement(3850316..3853798)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTEPRFVHLRVHSDYSMIDGLAKTGPLVKKVAKLGMPAFAITDFTNLCGLVKFYGSAHSA
GIKPIIGADFYVESDLLGDEYAHLTVLACNNEGYQNLTLLISESYQKGYGAVGPTIKREW
LEKYSAGLILLSGGRMGDVGKFLLRGNRAMVEQCLDFYQEHFPNSYYLELIRTGRLDEEN
YLHAAVELAAEKNLPVVATNDVCFLESEDFDAHEIRVAIHDGYTMADPKRPKNYSPQQYL
RSEQEMCELFSDIPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDMSTEDFLVEKSKQGL
EERLEFLYPDPEIRAQKRPEYDDRLDIELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERISMPDFDVDFCMEKRDQVIDHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFIAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPIYCDPEGQNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMVNARRAKKDLEPIDIAAIPLDDQKSFDML
QRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVEWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKQPEEM
AKQRSVFEAGSIKQGVNGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARQKAGHFKELFDLCARVDTKKINRRVMEKLIMSGAFDRLGPHRAALMS
SLEDAFKAADQHAKAEATGQTDMFGVLAEKPEQVEHAYASTPKWPDQVVLDGERETLGLY
LTGHPITSYLKEIERYTNGMRLKDVNPTPRGQVTTVVGLVLASKILTTKRGNRIGISTLD
DRSGRLEIMLFSDALERYQHLLVQDKILIATGQVSFDDFSGGLKMTVRELMDISEAREKF
ARGLAISLSDRQIDEQLLNRLRGALEPHRSGTIPVHLYYQRVDARARLRFGATWRVTPTD
TLLTDLRTLLGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaccacgttttgtgcacctacgtgttcacagcgactattcaatgattgatggc
ttggccaaaacaggcccattggtaaaaaaagttgccaagttgggtatgccagcttttgcg
attacagattttaccaacttgtgtggattggtgaaattttatggcagtgcccacagtgcg
ggtatcaagccgattattggagctgacttttatgtggaaagcgatttgttgggtgatgag
tacgcgcatctgacggtccttgcctgcaataacgaaggttaccaaaacctgactttgctg
atctcggagtcttaccaaaaaggctatggggcagttgggccaaccatcaagcgggaatgg
ctggaaaaatacagtgctggtttgatcctgctgtctggcggacgcatgggagatgtcggg
aaattcctgctgcgtggaaatcgtgcgatggtggagcagtgtcttgatttttaccaagaa
catttcccaaacagttattatcttgaattgatccgtacgggacgcctggatgaagaaaat
tatcttcatgccgcagtggagctggcggcagaaaaaaatctgccggttgtggcaacgaat
gatgtctgttttctggaaagtgaagattttgatgcacatgagattcgggttgctattcat
gatggctatacgatggctgatccgaaacgccctaaaaattacagtcctcagcaatatctg
cgcagcgaacaggagatgtgtgaactattctccgatattcctgaggcgctgcaaaatagt
gtagaaatcgccaaacgctgtaatgtcactatccgcctcggtgaatactttcttcctcag
tttccaacgggagatatgagcactgaggatttcctggttgaaaaatccaagcaaggtctg
gaagagcgtctggagtttctctatcccgatccggaaattcgggcacaaaagcggccggaa
tatgatgatcgtctggatattgagctgaacgttattaatcagatggggttccccggttac
ttcttgatcgtgatggaatttatccaatggtcaaaagataacggtgttcctgttgggccg
gggcgtggctccggtgccggctctctggttgcttatgctttaaaaattaccgatctcgat
ccgctggaatttgacttgctgttcgaacgttttcttaaccctgaacgtatatccatgccg
gactttgacgtcgatttctgtatggagaaacgcgatcaggtcattgatcacgttgcagat
atgtacgggcgggatgcggtatcgcagataatcaccttcggtacaatggctgccaaagcg
gttatccgcgatgtcgggcgtgtactcggtcatccttatgggtttgttgaccgaatctcg
aagttagtgccgcctgatcccggtatgacgctggaaaaagctttcatagcagagcctcaa
ctgcccgaaatttatgaagcagatgaagaagtcaaagcgttgattgatatggcgcgtaag
ctggaaggtgtgacccgtaatgccggtaaacacgccggtggtgtggttattgccccaact
aaaatcaccgactttgcgcctatttactgcgatcctgaaggacaaaacccggttacccag
tttgataaaaacgatgtggaatatgcggggctggttaaatttgacttcctcggattgaga
accttaaccatcatcaattgggcacttgagatggtgaatgcacggcgtgccaaaaaagat
ttggaacccatcgatattgctgcgattccgttggatgatcagaaaagcttcgatatgctg
caacgttctgaaactacggccgtgtttcagcttgaatcgcgagggatgaaagatctgata
aaacgtcttcgtcccgactgttttgaagatatgatcgcattggtggccttgttccgtccg
gggccgttgcaatcagggatggtagataactttatcgaccgtaaacatggaagagaggaa
atctcctacccggatgttgagtggcagcacgaatctttgaaacctgtcttggaaccgaca
tatggcatcatcttgtatcaggaacaggtgatgcagattgcgcaggttttggcaggttat
acccttggcggtgcagatatgcttcgccgtgcaatgggtaagaaacagccagaggaaatg
gcgaaacagcgctcagtatttgaagcgggatcgataaaacagggcgttaacggcgaactc
tcgatgaaaatcttcgatttggtggagaaattcgcgggttatggcttcaacaaatcgcac
tctgccgcttatgcgttggtttcttatcagacattatggttgaaagctcactacccggca
gaattcatggcagcggtgatgactgcggatatggataatactgaaaaagtggttgggttg
gtggatgagtgttggcgtatggggcttaaagtcttgccaccagacatcaacagtggtttg
tatcattttcacgttaatgatgaaggtgaaattgtttacggcattggtgcgatcaaaggt
gtcggtgaagggccgatagaagccattattgaagcacgccagaaagcaggacacttcaag
gagcttttcgatctgtgcgcgcgggttgatactaaaaaaataaatcgccgtgtgatggaa
aagctgattatgtctggcgcgttcgacagactagggccacaccgtgcggcgttgatgtct
tctctggaagacgcctttaaggcagcagatcaacatgcaaaggctgaagcgaccggtcag
acggatatgtttggtgtgttagctgaaaaacccgaacaggttgaacatgcgtatgccagt
acgccgaaatggccagatcaggttgttttggatggtgaacgggaaacgttgggcctgtat
ttaacgggtcaccccattaccagttatttaaaagagattgaacgatatacgaatgggatg
cgtctaaaagatgtgaatccgacccctcgtggtcaggtgacgactgtggtaggtttggtg
ctggcttctaaaatactgacaacgaagcggggcaaccggattggcatcagtacgttggat
gatcgctcagggcggttggaaatcatgctgttttctgatgccttggaaaggtatcagcat
ttattggtgcaggacaaaattttgattgctaccggacaagtcagctttgatgacttcagc
ggtgggcttaaaatgacggtccgcgaattgatggatatcagtgaggcacgtgaaaaattt
gcacgtggtcttgctatatctttgtcagacaggcaaattgatgaacaattattgaaccgt
cttcgtggtgcattagagccacatcgttcagggacgataccggttcatctttattaccag
cgggtagatgctcgtgcccgtttacgattcggtgcaacatggcgggtaacaccaacggat
acccttttgacagatctgcgaaccctgctgggtaatgagcaggtagaattagaatttgac
taa
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integrated database retrieval system
