Xenorhabdus nematophila ATCC 19061: XNC1_4035
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Entry
XNC1_4035 CDS
T01274
Symbol
recD
Name
(GenBank) exonuclease V, alpha chain with recC and recD: 5' and 3' nuclease, ATPase, recombinase, helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XNC1_4035 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_4035 (recD)
Enzymes [BR:
xne01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XNC1_4035 (recD)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XNC1_4035 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
SH3_13
UvrD-helicase
SLFN-g3_helicase
AAA_22
nSTAND3
UvrD_C
AAA_16
ATPase
PhoH
AAA_28
DEAD
NACHT
FtsK_SpoIIIE
CbiA
SRP54
NPHP3_N
DUF7966
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
CBJ92060
UniProt:
D3VCM5
LinkDB
All DBs
Position
complement(3898957..3900843)
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AA seq
628 aa
AA seq
DB search
MNSMLSLLQQTVSQKLFRPLDVQFAYAMVEDENPLLLLIAALLSAESGAGHVCLPLDRIS
PKYLFEGRQPELAVALWSLSGKPDHAQIVAALQTCPAVSQGNLSTPMVLSYQRNSGYSLY
LQRMWQSERRVADFFASVELTDAFDEMQIRRILDELFGVAAEGEVDWQKVAAAVAVTSRI
SVISGGPGTGKTTTVAKLLVTLIKLYEKQQLSIQLAAPTGKAAAKLTESLRDAVKKLALT
PEQWRSIPEQAQTIHRLLGAQPDSQKLRYGRDNPLSLDILIIDEASMVDLPMMAHLIDAL
PPRAKVIFLGDKDQLASVEAGAVLGDICRFAEQGYSTKRAEQLGQLTGCQLMPYATSDSG
NTVSAVRDCLCLLRKSYRFHSASGIGQLASAVNQGDRSGVSAVLNQAFPDVYFNPLSEDE
DYQRLLAETASGYYQYLAMVNERAPEKTILAEFNRFRLLCALREGPFGVAGLNQRVEQLL
HRKGVITLPKSVENRGYAGRPIMILRNDSTLGLFNGDIGIMLRNQDNELRAYFQLSDGQI
KGFQPSRLPHHETAYVMTVHKSQGSEFEHTALVLPTQYSPIVSRELVYTALTRAREKLTI
YAHRPVLDKAVATATQRRSGLEEWFNPQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaattccatgttgtcactcttgcaacaaaccgtgagtcagaaattatttcgtccactg
gatgtgcagtttgcttatgcaatggttgaagatgaaaatcccctgttgttgctgatcgcc
gctttgttaagtgccgaatcgggagcagggcatgtttgcctgcctttggatcgcatttcg
ccaaaatatttatttgagggcagacaacctgaattagcggttgcactctggtcgttgtcg
ggcaaaccggatcatgcgcaaattgtggctgctttacagacgtgtccggcggtaagtcag
ggaaatctttccactccgatggtactttcttatcagaggaattcaggttacagcttgtat
ttacaacgtatgtggcaaagtgaacggcgggtggcggatttttttgcctcggttgaattg
actgatgcgtttgatgaaatgcagatacgccgcattttggatgagctttttggtgtggct
gcggaaggagaggtggattggcagaaagtagccgctgcggttgccgtaacaagccgtatt
tctgttatctccggcgggccgggaaccggaaaaacaacaacggtagctaagttgttggtt
accctgattaaattatatgaaaaacaacaactaagcattcaattagccgcacctacgggc
aaggcggcagccaaattaacagaatctctcagggacgcggtaaagaaactcgcattaacg
ccagaacaatggcgcagcattccggaacaggcgcagactatccaccgtttgctgggtgca
cagccagatagccaaaaactgcgttatggtcgtgataatccactctccctggatattttg
atcattgatgaagcctcaatggtggatttgccgatgatggcacatttaattgatgcttta
ccgccgcgagcgaaagtgatctttttgggagacaaagatcagttggcgtcagttgaagct
ggcgcggttttgggggatatctgccgttttgccgaacagggatatagcaccaaacgggcc
gagcagttagggcaattaaccggatgtcagttaatgccttatgctacgtcggattcaggc
aacaccgtttccgcagtacgggactgtttatgtctgcttcgcaaaagttatcgcttccat
tccgcttccggtatcgggcaattggcatcggcagtgaatcagggagatcgttccggtgtt
tctgcggtgttgaatcaggctttccctgatgtttattttaatccgctgtcagaggatgaa
gattatcaacgtttgctggctgaaacggcttctggctactatcaatatctggcaatggtc
aatgaacgcgcaccagaaaaaactattttggcagaatttaatcgttttcggctgttatgt
gcgctcagggaaggcccgtttggtgtcgcgggtctgaaccaacgagtggagcagttactg
cacagaaaaggcgtgattactctgcctaagagtgtggaaaatcggggctatgcagggcgt
ccgattatgatattgcgtaatgacagtacgcttggattgtttaacggcgatatcggcatt
atgctcagaaatcaggataatgaactgagagcctatttccagctatccgatggacagatt
aaagggtttcagcccagtcgcttgccccaccatgaaacagcatatgtgatgaccgtgcat
aaatcgcaaggttcagaatttgaacataccgccttggttttaccgacccaatattcaccg
atagtcagccgggagttagtctataccgcattgacccgggcgcgggaaaaactgactatt
tacgctcaccgacctgtgctggataaggctgttgccacagcaacccagcgacgaagcggg
ctggaggagtggttcaacccgcagtga
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