Xenorhabdus nematophila ATCC 19061: XNC1_4331
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Entry
XNC1_4331 CDS
T01274
Symbol
polA
Name
(GenBank) multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal)
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
xne
Xenorhabdus nematophila ATCC 19061
Pathway
xne03030
DNA replication
xne03410
Base excision repair
xne03420
Nucleotide excision repair
xne03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xne00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
XNC1_4331 (polA)
03410 Base excision repair
XNC1_4331 (polA)
03420 Nucleotide excision repair
XNC1_4331 (polA)
03440 Homologous recombination
XNC1_4331 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xne03032
]
XNC1_4331 (polA)
03400 DNA repair and recombination proteins [BR:
xne03400
]
XNC1_4331 (polA)
Enzymes [BR:
xne01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
XNC1_4331 (polA)
DNA replication proteins [BR:
xne03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
XNC1_4331 (polA)
DNA repair and recombination proteins [BR:
xne03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
XNC1_4331 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XNC1_4331 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Prok-E2_E
HHH_5
DUF2529
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
CBJ92353
UniProt:
D3VEA2
LinkDB
All DBs
Position
4159934..4162726
Genome browser
AA seq
930 aa
AA seq
DB search
MAQIADNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLIIQYKPSHIAV
VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVAAMGLPILVISGVEADDVIGT
LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVIEKYGVPSELIIDFL
ALMGDSSDNIPGVPGVGEKTALGLLQGIGGLDAIYARLDDIATLSFRGAKTLGGKMEQHK
EVAYLSYQLATIKTDVELDKHCIELSVVPPDADELLALFSHYEFKRWINDVQNGTWLEGN
GQKTVSGSAKPALAVPNSTTVKISPESYQTILERQSLEAWIEKLKHAPAFSFDTETDGLD
TLTANLVGMSFAIAAGESEVEAAYLPLAHDYLDAPQQLDLHEVLTALKPLLEDANLPKIG
QNLKFDRGVLARYDVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAG
KGKKQLTFNQIPLEEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLS
RMERTGVLIDARTLAEHSREITVRLDELEKSAYALADEEFNLASPKQLQVILFEKMKLPV
LKKTPNGAPSTNEEVLEELAENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTS
YHQAVTATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLS
QDKGLLAAFAQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAFGLSRQLG
IPRGEAQRYMDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRNAMRRKA
SEREAINAPMQGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQ
KIRALMEQSMLLDVPLKVDVGIGDNWDQAH
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atggcacagatagcagacaatcccctgattttggttgatggctcttcctacctttatcgt
gcataccatgcgttcccgccactgacaaacagtgcaggagaaccaacgggcgctatgtat
ggcgtgctgaacatgctgcgcagtttgatcattcagtataaacccagccatatcgcggtc
gtgtttgatgccaaggggaaaacgttccgtgatgagttatttgcggaatataaatctcat
cgtcctccgatgccggatgatttacgtgcccagattgaaccgctgcataagatggtcgcg
gcaatgggcttgcccattctggtcatatcgggcgttgaagcggatgatgtcattggcaca
ttggcattgcaggctgaaaaagagggccgttctgtgctgatcagtaccggcgataaagat
atggctcaattggtcacaccgaatattaccctgattaatacgatgaccaataccatattg
gggccggaagaagtcattgaaaaatatggtgttccctctgaattgatcatcgactttctg
gccctgatgggagactcttccgataacattcctggtgtaccaggcgttggtgagaaaacg
gctttgggattattgcaggggattggtggattggatgccatttatgccagacttgatgac
attgcgacattgagtttccgtggtgctaaaacgctgggcggaaaaatggagcagcataaa
gaagtggcttatctttcctatcagcttgcgacgattaaaactgacgttgagttggataaa
cactgtatcgagctttccgttgtaccacccgatgcggatgaattgctggcactgttcagt
cattatgaatttaagcgctggatcaatgatgtgcagaatggaacctggctggaaggcaat
ggtcagaagacggtctccggtagtgctaaaccagcattagcagtgccaaactcaaccact
gttaaaatttcaccggaaagttaccaaaccatccttgaacgtcagtcgcttgaggcgtgg
attgagaagctgaagcacgccccggcattttcctttgatactgaaactgatggtcttgac
acgctgacagccaatttggtggggatgtcttttgccattgcagccggtgagtcagaggtt
gaagcggcttatctgccgttggcacatgattatctggatgcgccacagcaactggatctg
catgaagtgctcacagcattaaaaccgttgctcgaagatgcgaacctgccaaaaattggt
cagaacctgaaatttgaccgtggtgttctggcgcgttatgacgttgtgttggaggggatt
gtttttgataccatgctggagtcgtatgtactgaacagcgtcgcgggacggcatgatatg
gatagtctggcagaacgccatctaagctataaaaccacgacatttgaagacattgcgggc
aaaggcaaaaagcagctgactttcaatcaaattccgttggaggaagccgcaaaatacgca
gcagaagatgccgatgtgactttgcgattgcatcaggcaatgtatcctcagttagcaagt
gcagaagtgctgaaaaaagtgtttcagaaaattgaaatgccattagtgcccgtgctttcc
cgtatggaaagaaccggtgtattgatcgatgcccggacactggccgagcattcacgggaa
atcacagtacgtctggatgaattggaaaaatccgcttacgcgttggcggacgaagagttc
aatctggcttcgccaaagcagctccaagtgattttgtttgaaaaaatgaagttgcctgtc
ctgaaaaagaccccgaatggtgcgccatcgacaaacgaagaagtgttggaggaactggca
gaaaatcatgaattgccacgggtgattctggagcatcgtggtctggcaaaattgaaatcc
acctataccgataagttgccccagatggtgaatcctctgacgaaccgtgttcatacgtct
tatcatcaggcggtgacggcaaccgggcgcctttcttcccgtgatccaaacctgcaaaac
attcctgttcgtaatgaagaggggagacgtattcgtcaggcatttattgcgccgacaggt
tatcgcattatggcggcggactattcgcagatcgaattgcggattatggcgcatctgtca
caggacaaagggctgctggctgcgttcgcacagggcaaggatattcatcgggccactgcg
gcagaagtatttggtgtgccactggaacacgtcactggcgaacaacgccgcagcgcgaag
gcgattaactttggtctgatttatggaatgagtgcttttggtttatctcgccagttaggc
attccgcgtggtgaagcgcaacgttatatggatctctattttgagcgctatccgggggtg
ttgaattacatggaacgtacacgtcagcaagctgctgaacatggatttgttgaaaccctg
gaagggcgccggttgtatttgccggagatcaaatcacggaatgccatgcgccgtaaggct
tcagaacgtgaagcgattaatgccccgatgcagggcacggcggcggatatcatcaaattg
gccatgattgcggtggatgattggatcgtcagcgaaaaacccaatgtacgcatgatcatg
caggttcacgatgaattggtgtttgaggtacatgaatccgaattggcgatggcagagcaa
aaaatcagggcgttgatggaacaaagtatgctgcttgatgtgccattaaaagtcgatgtt
gggattggtgacaattgggatcaggcacattga
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