Xenorhabdus nematophila AN6/1: XNC2_0498
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Entry
XNC2_0498 CDS
T03752
Symbol
deaD
Name
(GenBank) cold-shock DeaD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNC2_0498 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xnm03019
]
XNC2_0498 (deaD)
03009 Ribosome biogenesis [BR:
xnm03009
]
XNC2_0498 (deaD)
Enzymes [BR:
xnm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
XNC2_0498 (deaD)
Messenger RNA biogenesis [BR:
xnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XNC2_0498 (deaD)
Ribosome biogenesis [BR:
xnm03009
]
Prokaryotic type
rRNA helicases
XNC2_0498 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UvrD-helicase
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CEK21497
LinkDB
All DBs
Position
I:443367..445316
Genome browser
AA seq
649 aa
AA seq
DB search
MTTETEISFADLGLSAPILSALGDMGYEKPSPIQQQCIPHLLNGRDVLGMAQTGSGKTAA
FTLPLLHNINAELKAPQILVLAPTRELAVQVAEACSDFSKHMRSVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLDLSNLKGLVLDEADEMLRMGFIEDVENIMSQIPA
EHQTALFSATMPEAIRRITRRFMNDPQEVRIQSSVTNRPDISQSYWSVYGVRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQTLREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPDAELLGQRRLEKFAANVQQQLESSDLDQYRALLAKLGTDEELEME
TLAAALLKMAQGERPLILPPDPVRRPRREFNDRDDRRRNGNGFGDRDKSDRGDRGDRGDR
PRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFATHSTIELPK
GMPGELLSHFTRTRILNKPLNMQLMGDAQPFERRERRGGGRNGNGNGGNGPRRDRDNAGN
GNNGGRRFNNERRGGGERGSFRGRNNDNFSGGAPRRRQSNDNGNSTSNV
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgaccactgagactgaaatctcttttgctgatttaggtttatcggcacctattctttct
gcactgggagacatgggctatgaaaagccttctcctattcaacaacaatgtattcctcac
ctgctgaacggtcgtgacgtgctgggcatggcacagacgggaagtggtaaaactgcggca
ttcaccttgccattactgcataacatcaatgctgaacttaaagctccacagatccttgtg
ttagcgcctacccgtgaactggcggtacaggttgctgaagcgtgttcagatttctctaaa
catatgcgcagtgtaaatgtcgttgcactctacggtgggcaacgttacgacgttcaatta
cgtgccctgcgtcagggaccacagattgtagtgggaaccccgggtcgtctgctggaccac
ctgaaacgtggaactttggatctgtccaacctgaaaggtctggtactggatgaagctgac
gaaatgctgcgcatgggctttatcgaagatgttgaaaacatcatgagccagatccctgct
gaacaccagacagctctgttctcagcaaccatgcctgaagcgattcgtcgtattacccgt
cgtttcatgaacgatccgcaggaagttcgtattcagagcagcgtgacaaaccgtcctgac
atcagccagagttactggtctgtttacggtgtgcgcaaaaacgaagcgctggtacgtttt
cttgaagcagaagattttgatgctgcgattattttcgtgcgtaccaaaaatgcaacgctg
gaagtagcagaagcgctggagcgtaacggttacaactctgcggcactgaatggtgacatg
aatcagaccctgcgtgagcagactcttgagcgtttgaaaaatggtcgtctggacattctg
attgcaacagatgttgctgctcgtggcctggatgttgagcgtatcagtctggttgttaac
tatgatatcccaatggatgcagagtcttatgtacaccgtattggtcgtaccggccgtgca
ggtcgtgcaggtcgtgctctgctgttcgttgaaaaccgtgaacgtcgtctgctgcgtaac
atcgaacgcactatgaagctgactatcccagaagttgaactgccggatgcagagctgctg
ggccagcgtcgtctggagaaattcgcagctaacgtccagcaacaactggaaagcagcgat
ttggatcagtaccgtgcactgttggctaagctgggcactgatgaagagctggagatggaa
acactggctgctgccctgctgaaaatggcacaaggtgagcgcccactgattctgccacct
gatccggttcgccgtcctcgccgtgaattcaacgaccgtgatgaccgtcgtcgtaacggc
aatggttttggcgatcgtgacaaaagcgacagaggtgaccgaggcgatagaggcgaccgt
cctcgtcgtgagcgtcgtgacgtgggtgatatggagctgtatcgcattgaagtgggccgt
gatgatggcgttgaagttcgtcacatcgtgggcgcaattgcaaacgaaggtgatatcagc
agccgttatatcggtaatatcaaactgtttgccactcactccacgattgagttgccaaaa
ggaatgccaggggaattattgtctcactttacccgcactcgcatcctgaacaagcctctg
aacatgcagttgatgggtgatgcacaaccatttgaacgtcgtgagcgtcgtggtggtggc
cgcaatggaaacggcaacggtggcaatggcccacgtcgtgatcgtgataatgctggcaat
ggcaataatggtggtcgtcgttttaataacgaacgtcgtggcggcggtgagcgtggttct
ttccgtggtcgcaacaacgataacttcagcggtggcgcaccacgtcgtcgtcaaagcaat
gataatggcaacagcactagcaacgtataa
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