Xenorhabdus nematophila AN6/1: XNC2_2138
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Entry
XNC2_2138 CDS
T03752
Symbol
hrpA
Name
(GenBank) helicase, ATP-dependent
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xnm03019
]
XNC2_2138 (hrpA)
Enzymes [BR:
xnm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XNC2_2138 (hrpA)
Messenger RNA biogenesis [BR:
xnm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XNC2_2138 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
NACHT
nSTAND3
AAA_11
ResIII
PhoH
AAA_23
T2SSE
TsaE
NTPase_1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CEK23132
LinkDB
All DBs
Position
I:2138228..2142133
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AA seq
1301 aa
AA seq
DB search
MESPLTAAFAELFAELDHTPLRDQFRLRKRLHGAAKIKNQASLQAVAQSIAADIAIAKQK
MINRQAACPSINYPENLPVSQKKDAIYKAIRDNQVVIIAGETGSGKTTQIPKICLELGRG
VKGLIGHTQPRRLAARSVANRIADELETPLGSAVGYKIRFNDQVSENTLVKLMTDGILLA
ELQQDRLLLQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPVAGDDNDSDRDQLEAIIDAVNELGRESPGDILVFMSGE
REIRDTADALSKQNFLHTEILPLFARLSNSEQNRIFQPHVGRRIILATNVAETSLTVPGI
KYVIDTGYARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEDDYLSR
PEFTDPEILRTNLASVILQMTSIGLGDVSAFPFVEAPDKRNIQDGVRLLEELGAIDPESL
SEDVYRLTPTGRQLSQLPIDPRLARMVLEAKTHGCVREVMVIVSALSIQDPRERPLEKQQ
ASDEKHRRFVDKDSDFMAYLKLWDFLVDQQKLLSSSQFRKLCRQDYLNYLRVREWQDVYT
QLRQVVKEIGLPINSQDADYRSIHLALLTGLLSHIGQKDIDKQEYTGARNARFSVFPGSG
LFKKPPKWAIVAELVETSRLWGRIAARIEPEWVEPLAGHLIKHHYSEPHWKKSQGAVMAT
EKVTLYGLPIVAGRLVNYSQIDPMLCRELFIRHALVEGDWQTRHSFFRANLKLREEVEEL
EHKSRRRDILVDDETLFSFYDQKIGKDVVSARHFDRWWKTASKEQPELLNFEKSMLIKGD
ADKVNALDYPNYWYQDNLKFRLSYQFEPGTDADGVTVHIPLPVLNQVRDEGFDWQIPGIR
HELIVALIKSLPKPMRRNFVPAPNYAQAFLERVTQPQATLLDSLERELRLITGVTASRDD
WQLEQVPDHLKITFRILGEKNKTLAEGKDLSALKVKLKGKVQETLSAVADDGIEQNGLHI
WSFGELPECYEQKRGGYSVKAFPALVDEKESIGIKLFETESEQQNAMWEGTRRLLLLNIP
SPIKYLHEKLPNKSKLGLYFNPYGKVLDLIDDCISCGVDRLIAENGGPAWNEQAFSSLQN
KVRADLNDAVVDIAKQVEQILTAVFNINKRLKGRVDISLALALSDIKEQISGLVFKGFVT
SHGWTRLVDVLRYLNGIERRLEKLAINPNKDRAHMSQIEHIQRQWQQWQAKLSVQQKQLS
EVKEVRWMIEELRISLFAQQLGTAYPISDKRILQAMENIAS
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
gtggaatcacctttgacagcagcatttgctgaattattcgctgaacttgatcatacgcca
ctgcgcgatcagttccgtttgagaaaacgcttgcatggggcagcaaaaattaagaatcag
gcttccttgcaggctgtagcacaatccattgctgcggatattgctattgcaaaacaaaaa
atgattaatcgccaagccgcatgtccctcaattaactatcctgaaaacttacctgtcagt
cagaaaaaagacgctatttacaaagcgattcgggataatcaggttgtcattattgccgga
gaaaccggttcgggtaaaacgacacagatcccaaaaatctgccttgagttgggcaggggc
gttaaggggctgattggccatactcaaccccgccgtttggctgcccgttcagttgccaac
cgaattgcggatgaactggaaacaccgctgggttcagcagtcggttataaaatccgtttt
aatgatcaagtcagtgaaaatacattggttaaattgatgactgacggtattttgctggcg
gaattacaacaagatcgcttgttgttgcaatatgacacattaattatcgatgaagcgcat
gaacgcagcctgaatattgattttatcctcggttacctgcgtcaattgttgccaaaacgg
cccgacctgaaagttatcattacttccgcaacgattgatcctgaacgtttctcccgtcac
tttaacaacgcgccaattattgaagtatccggacgtacctatccggtagaagttcgttat
cgtcccgtcgctggtgatgataatgacagtgatcgggatcagcttgaagccatcattgat
gctgtgaatgaattagggcgggaaagccccggtgacatcctggttttcatgagtggtgaa
cgagaaatccgtgatacggcggatgcactcagtaagcagaattttctgcatactgaaatt
ttaccgttgtttgcacggctttctaacagcgagcaaaaccggatatttcagcctcatgtc
ggccgccgtattatcctggcaaccaacgtagcagaaacgtcgttgactgtgcctggtatt
aaatatgtgatcgatacaggatatgcacgtatcagccggtacagttaccgcactaaagtg
cagcgtttgccgatagaaccgatctctcaggcatcggccaatcaacgaaaagggcgctgt
ggtcgtgtctcagacgggatttgtattcgtctctattcagaagatgattatttatcacgc
ccggaatttactgatcctgaaattctgcggaccaatttggcctctgttattttgcagatg
acctccattggcttgggtgatgtcagcgcattcccatttgtcgaagcgccagacaaacgc
aatattcaggatggtgtccgtttgctggaggaattgggcgctatcgatccagaatctttg
tcggaagatgtttaccgattgacaccgacgggacgccaattatcacagttgcctatcgat
ccacgcttagcccgcatggtactggaggcgaaaacccacggttgtgtccgtgaggtgatg
gtgattgtttccgccctgtcaattcaagatccgcgagaaagaccgttggaaaaacaacag
gcttctgacgaaaaacatcgtcgtttcgtggacaaagattcggatttcatggcatacctg
aaattatgggatttcttggtggatcagcaaaaattgctttccagttctcaattccgcaaa
ctttgtcgtcaggattatctgaattatcttcgtgtcagagaatggcaggatgtgtatacc
caacttcggcaagttgtaaaagaaatcgggctgccgattaatagtcaggacgcggactat
cgcagtattcatcttgctttgttgaccggtttgttatcccatattgggcaaaaagatatc
gataaacaggaatataccggtgcacgtaatgcgcgtttctcggtttttccaggctctgga
ttatttaaaaagccgcctaaatgggcaatcgtcgctgaactggtggaaaccagccggtta
tggggacgcattgctgcgcgtatcgagcctgaatgggtagaaccgttggccgggcattta
attaagcatcattatagcgaaccgcattggaaaaaatcacagggtgcagtcatggcaacg
gagaaagttaccctgtatggtttgccaattgtggcaggtcgtttggtgaattatagccag
atagatcccatgttatgccgcgaactttttatccgtcatgctttagtggaaggggactgg
caaacgcgtcactcgttcttccgtgccaatctgaaattgcgtgaagaggttgaagagctg
gagcataaatcccgccgccgggatatcttggtggatgatgaaacgttattcagtttctat
gatcagaaaattggcaaagatgttgtttcagctcgtcattttgaccgctggtggaaaacg
gcaagtaaagaacaacctgaattgctcaacttcgaaaaaagtatgttgatcaagggggat
gcagataaagttaacgccttggattatccgaattattggtatcaggataatttgaaattc
cgcttaagttaccaatttgagccgggaacagatgctgatggcgttactgtacatattccg
ttaccggtattgaatcaagtcagggatgaaggatttgattggcagattccgggcattcgt
catgaattgattgttgctttgattaaatcattaccaaaaccgatgcgccgtaattttgta
ccagcacctaattatgcgcaggcatttctggagagagtaacacaaccacaggcaacgtta
ttggatagtcttgaaagggaactccggctcataactggcgtgacagcgtcacgcgatgac
tggcagttagaacaagtccctgatcatctgaagataacattccgtattcttggtgagaaa
aataaaacgctggcagaaggcaaagatctgtcagcgttgaaagtcaaattgaaaggaaaa
gttcaggaaaccctttcagcagttgcagatgatggcattgaacaaaatggcctgcatatc
tggagctttggtgaattaccggagtgctatgaacaaaaacgcgggggttattctgttaag
gcattcccggcgctggtggatgaaaaagagagcattggcataaaattattcgaaactgaa
tctgaacaacaaaatgccatgtgggaaggaacgcgccgtctgttattgctcaatattcca
tcgccgattaaatatttgcatgagaaattgccaaacaaatctaagttgggattgtatttt
aacccatatgggaaggtactggatttgattgatgattgtatctcctgtggtgtggataga
ttgattgcagaaaatggcgggccggcatggaatgaacaggcattctccagtttgcagaat
aaagtgcgtgctgatttgaatgatgcagttgttgatattgccaaacaggtggaacagatc
ctgacagcagtctttaacattaacaagcgcttgaaagggcgggtagatatctccctcgca
ctggcgttgtcagatattaaagaacaaatttctggtttggtctttaaaggatttgtcact
tctcacggttggacgcgtttggtggatgtgttgcgctatttgaatggtattgagcgtcga
ttggagaaactggcgattaatcctaacaaagatagggcacacatgagccagattgagcat
attcagcgccagtggcaacaatggcaggcaaaattgtctgttcagcagaaacagttatcg
gaagtaaaagaagttcgctggatgattgaagagcttcgtattagtttgtttgcccaacaa
ttgggtacggcttacccaatatcagataagcgtattttgcaggcaatggaaaatatcgcg
tcgtaa
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