Xenorhabdus nematophila AN6/1: XNC2_2326
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Entry
XNC2_2326 CDS
T03752
Symbol
topA
Name
(GenBank) DNA topoisomerase type I, omega protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
xnm
Xenorhabdus nematophila AN6/1
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xnm03032
]
XNC2_2326 (topA)
03400 DNA repair and recombination proteins [BR:
xnm03400
]
XNC2_2326 (topA)
Enzymes [BR:
xnm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
XNC2_2326 (topA)
DNA replication proteins [BR:
xnm03032
]
Prokaryotic type
DNA Topoisomerases
XNC2_2326 (topA)
DNA repair and recombination proteins [BR:
xnm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
XNC2_2326 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
CEK23320
LinkDB
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Position
I:complement(2343646..2346243)
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AA seq
865 aa
AA seq
DB search
MAKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGAASQKSSISSTDKNKKKVK
KDEKTALVSRMGVDPYHDWEANYQILPGKEKVVAELKTLAEKAEHVYLATDLDREGEAIA
WHLREVIGGDDARFSRVVFNEITKNAITQAFDKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKVARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWQLHADLVAKGEIALRMEVTH
EKGKPFKPVNAQQTHAAVSLLEKAKYSVIDREDRPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDALDMARGYISTHFGDKYLPKEGNVYSSKEN
SQEAHEAIRPSNVEVMAEELKDMEADAQKLYQLIWRQFIACQMMPAKYDSTTLTVQAGNF
ELRAKGRTLRFDGWTKVMPVLRKGDEDNTLPAIEANTELDLQQLFPSQHFTKPPARFSEA
SLVRELEKRGIGRPSTYASIISTIQDRGYVHVENRRFYAEKMGEIVNDRLEENFNELMSY
DFTARMEDQLDHVANNEANWKGVLDEFFSNFSEQLDVASKEPDEGGMRPNPMVITSIDCP
TCCRAMGIRTATTGVFLGCSGYALSPKERCKQTINLIPENEILNILEGDDAETNALRARR
RCKKCGTAMDSYLIDNQRKLHVCGNNPACDGYEVEEGEFRIKGYDGPIVECDKCGSEMHL
KMGRFGKYMGCTNEECKNTRKILRNGEVAPPKEDPVPLPELACEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELVRFKDRLPEKLHYLAEAPVADPEGNKTVVRFSRKTKQQYV
SSEKNGKATGWAAFFVEGSWAVKEK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagctcttgttatagtggagtccccggcaaaagccaaaacaatcaataaatat
ctggggaatgactacgttgtgaaatccagtgtgggtcatatccgtgatttgccgacgagt
ggagcggcgagtcaaaagagttcaatctcatcgactgataagaataagaagaaagtaaag
aaagatgagaaaacagcgctggtaagtcgtatgggagtggatccctatcatgactgggaa
gcaaattaccaaattttacccggcaaggaaaaagttgtcgcggagctgaaaacgctggct
gaaaaagctgagcatgtctatcttgcaacagatcttgaccgcgaaggagaggctattgca
tggcacttgcgggaagtgatcggcggagatgatgctcgtttcagtcgtgttgtattcaat
gaaattaccaagaatgcaatcactcaggctttcgataaaccgggcgaattgaatattgac
cgtgttaacgctcagcaagcacgccgttttatggatcgtgtggtgggttatatggtgtcc
ccgttattgtggaaaaaggttgccagaggattatctgcggggcgggttcaatccgttgcc
gttcgtctggtggttgaacgggagcgtgaaattaaggcatttgtaccggaagagtattgg
caattacatgcggatttagtggctaagggagagatagcgcttcgcatggaagtcactcat
gaaaagggaaaacctttcaaaccggtaaatgctcaacaaacacacgcggcggtatcttta
cttgagaaagcgaagtatagcgtcattgaccgcgaagatcgcccgacatccagtaaaccg
ggtgcaccgtttattacctcaacattgcaacaggctgcgagtacccggcttggatttggg
gtcaaaaaaaccatgatgatggcgcaacgcttatatgaagcgggtcatatcacttatatg
cgtactgactcgaccaatttgagtcaggatgcgcttgatatggctcgtggttatatcagc
acccactttggtgataaatatttaccaaaagagggaaatgtttatagcagtaaagagaat
tctcaggaagcccatgaggcgattcggccttctaatgttgaagtgatggcggaagaactg
aaagatatggaagctgatgctcagaaactgtatcagctcatttggcggcagtttatcgct
tgtcagatgatgcccgcgaaatatgattctacaacgttaacggttcaagccggtaatttt
gaactgcgtgcgaaagggcgtacgttgcgttttgatggttggacgaaagtgatgcccgtg
ttgcgcaaaggcgatgaagataacactttgccagcaattgaagcaaatacagaactggat
ttgcagcagctgtttccaagccagcactttacaaaaccgccagcgcgtttcagtgaagca
tcactggtcagggaactggaaaaacggggtattggccggccatcgacatatgcttcgatt
atttcaaccattcaggatcgcggttatgttcatgttgaaaaccgtcgtttttatgcagaa
aaaatgggtgaaatcgtcaatgatcgtttggaagagaacttcaacgaattgatgagctat
gatttcacggcgagaatggaagaccagcttgatcacgtagcgaataatgaggcgaattgg
aaaggggtattggatgaatttttctccaatttcagtgaacaactggatgtcgccagtaaa
gagcctgacgaaggtggtatgcgtccaaacccgatggtgatcacttcaatcgattgtccg
acctgttgtcgtgcgatgggtattcgcacagcgaccacgggagtatttcttggttgctca
ggttatgctttgtcacctaaagaacggtgcaagcagacgatcaacctgattccagaaaat
gagatcctgaacattctggaaggggatgatgcggaaaccaatgcgttacgtgcccgccgc
cgttgtaagaagtgtggtacagcgatggatagctacttgattgataaccagcgtaaactg
catgtatgtggtaataatcctgcgtgcgacggttatgaagttgaagaaggtgaattccgc
atcaaaggctatgacggcccgattgttgagtgtgataaatgtggttcagaaatgcatctg
aaaatggggcgttttgggaaatacatgggttgtaccaacgaagagtgcaaaaatacccgc
aagattttacgtaacggagaagttgcgccaccgaaagaagatccggtaccgttacctgaa
ctcgcttgcgaaaaatcggatgcgtattttgtgttgcgtgatggtgccgcaggcgtattt
ttagccgctaatacatttccgaaatcccgtgaaacacgagcacctttggttgaggaactt
gtccgctttaaagatcgtttgccggaaaaattacattacttggcagaagcgccagtcgca
gatccagaaggaaacaaaacggttgtacgttttagtcgtaaaactaagcaacaatatgtt
tcttcagaaaaaaatggcaaagcgaccggatgggcggccttttttgttgaaggttcctgg
gcggtaaaagagaaataa
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