Xenorhabdus nematophila AN6/1: XNC2_3950
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Entry
XNC2_3950 CDS
T03752
Symbol
rpoD
Name
(GenBank) sigma D (sigma 70) factor of RNA polymerase
KO
K03086
RNA polymerase primary sigma factor
Organism
xnm
Xenorhabdus nematophila AN6/1
Pathway
xnm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
xnm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
XNC2_3950 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xnm03021
]
XNC2_3950 (rpoD)
Transcription machinery [BR:
xnm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
XNC2_3950 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF2610
D27-like_C
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
CEK24937
LinkDB
All DBs
Position
I:3969260..3971110
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AA seq
616 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLMLAENTNDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELPKEELDDDDDEEDEDRDDDSDSENDNSIDPELARQKFQELRTQYEITRQAIKS
YGRSNPNTAAEILTLSEVFKQFRLVPKQFDYLVNNMRSMMDRVRLQERQIMKMCVEQCKM
PKKNFITLFSGNETTDTWFTAAKAMNKPWSNKLLEIEEEVMRSLQKLRQIEEETGLTIEQ
VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMMMPEDKIRKVLKIAKEPISMETPVGDDEDSHLGDFIEDTTLELPLDSATS
ESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEVLRSFLDD
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctaaagctacttgtcacccgaggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattctgatcag
atagaagatatcatccaaatgatcaatgacatgggcatccaggtaatggaagaagcacct
gatgctgatgatctcatgttggcagaaaacacaaacgacaccgacgaagacgcggcggaa
gcagctgcgcaagtgttatccagcgtcgagtcagaaatcggtcgtaccaccgatccggtt
cgcatgtacatgcgtgaaatgggcacggtggaactactgactcgtgaaggtgagattgac
attgcaaagcgcattgaagatggcatcaaccaagtacagtgctccgttgccgaataccct
gaagcgatcacctacctgctggagcagtacgatcgcgtcgaagcaggcgaaagccgcctg
tctgatttgatcacgggtttcgttgatcctaatgcagaagaagatctcgcaccaaccgcc
actcacgttggctcagaacttcctaaggaagaactcgacgacgatgatgacgaggaagac
gaagatcgtgatgatgattcagacagcgaaaatgataacagcatcgatcctgaattggct
cgtcagaagtttcaggaactgcggacacaatatgaaattacgcgtcaggcaatcaaaagt
tacggacgcagcaatccaaatactgccgcagaaatattgaccctgtctgaagtattcaaa
caattccgtttagtaccaaaacagtttgattatctggttaacaacatgcgttccatgatg
gatcgtgtacgtcttcaagaacgtcaaatcatgaagatgtgtgttgagcagtgcaaaatg
ccgaagaaaaacttcatcacgctgttctctggcaatgaaactacggatacttggttcacc
gctgcaaaagcaatgaacaaaccgtggtctaataagttgctggaaatcgaagaggaagtt
atgcgcagcttacaaaagttgcgccaaatcgaagaagaaactggcctgaccattgaacag
gtcaaagatatcaaccgtcgcatgtcaatcggtgaagcgaaagcccgccgtgcgaaaaaa
gagatggttgaggccaacttacgtctggttatttcgattgcgaagaaatacaccaaccgt
ggtctgcaattcctcgacctgattcaggaaggtaatatcggcctgatgaaagccgttgat
aaatttgaataccgtcgtggttacaaattctcaacttacgcaacatggtggatccgtcag
gcaatcacccgttctatcgcagatcaggcacgtaccatccgtattccggtacatatgatt
gaaactattaacaaactcaatcgtatttcccgtcagatgttgcaggaaatgggtcgtgaa
ccttcaccggaagaactggcagaacgtatgatgatgccagaagataagatccgcaaagta
ctgaaaatcgccaaagagcctatctcaatggaaacaccggtgggtgatgatgaagattcg
catctgggtgattttatcgaggatacaacgcttgaactgcctctggattctgcaacttca
gaaagcttgcgttctgcaacgcacgatgtgcttgctgggctgaccgcacgtgaagcaaaa
gttttgcgtatgcgttttggtatcgatatgaacactgaccatacattggaagaagtgggt
aaacaatttgacgttacccgcgagcgtattcgtcagatcgaagctaaggctctgcgtaaa
ctgcgtcatccaagccgttctgaagtactgcgcagcttccttgatgactaa
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